Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24579 | 5' | -56.1 | NC_005264.1 | + | 31166 | 0.66 | 0.920414 |
Target: 5'- cGAGCCGAcGUGCCgccaacggucuggcgGCGGGCACc---- -3' miRNA: 3'- aCUCGGCU-CGUGG---------------CGCUCGUGaaagc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 95462 | 0.66 | 0.91816 |
Target: 5'- cGcGCCGgcgGGCGCaGCGAGCGCgggCGc -3' miRNA: 3'- aCuCGGC---UCGUGgCGCUCGUGaaaGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 34951 | 0.66 | 0.91816 |
Target: 5'- gUGGGCCGAGCgaguACUuaGAGCgACgcUCGc -3' miRNA: 3'- -ACUCGGCUCG----UGGcgCUCG-UGaaAGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 25143 | 0.66 | 0.91816 |
Target: 5'- -cGGCCGAGUaguugGCCGUGAGCGaggaCGu -3' miRNA: 3'- acUCGGCUCG-----UGGCGCUCGUgaaaGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 153978 | 0.66 | 0.91816 |
Target: 5'- gUGGGCCGAGCgaguACUuaGAGCgACgcUCGc -3' miRNA: 3'- -ACUCGGCUCG----UGGcgCUCG-UGaaAGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 50318 | 0.66 | 0.912359 |
Target: 5'- -cGGCCuGGaGCCGCGAGUACgcggcgUCGa -3' miRNA: 3'- acUCGGcUCgUGGCGCUCGUGaa----AGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 74445 | 0.66 | 0.912359 |
Target: 5'- cGuGuuGAGCuuCGCGGGCAUg--CGg -3' miRNA: 3'- aCuCggCUCGugGCGCUCGUGaaaGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 118067 | 0.66 | 0.906323 |
Target: 5'- -cGGCaaCGAuCGCCGCGGGCACcUUUGg -3' miRNA: 3'- acUCG--GCUcGUGGCGCUCGUGaAAGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 61808 | 0.66 | 0.906323 |
Target: 5'- cGGGCCGcgGGCAUCGCcGGGCAgUg--- -3' miRNA: 3'- aCUCGGC--UCGUGGCG-CUCGUgAaagc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 33252 | 0.66 | 0.900054 |
Target: 5'- cGcGCCGcAGCGCCuGCaGAGCGCgcaagaUCGg -3' miRNA: 3'- aCuCGGC-UCGUGG-CG-CUCGUGaa----AGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 71974 | 0.66 | 0.896181 |
Target: 5'- --uGCCG-GCACagaaucgcgauccuaCGCGAGCugUUUCu -3' miRNA: 3'- acuCGGCuCGUG---------------GCGCUCGugAAAGc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 89794 | 0.66 | 0.893553 |
Target: 5'- -uGGCCGcaUACCGCcGGCGCUUUCc -3' miRNA: 3'- acUCGGCucGUGGCGcUCGUGAAAGc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 102231 | 0.66 | 0.893553 |
Target: 5'- cGAGCCG-GCuGCCGCG-GCAUa---- -3' miRNA: 3'- aCUCGGCuCG-UGGCGCuCGUGaaagc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 64289 | 0.66 | 0.893553 |
Target: 5'- gGuGCCGAGUAUCGCGgcccacAGCGCg---- -3' miRNA: 3'- aCuCGGCUCGUGGCGC------UCGUGaaagc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 45916 | 0.66 | 0.893553 |
Target: 5'- gGAGCCGAGCAgCuaguuucgauGCGGuGCAUgacgUCGu -3' miRNA: 3'- aCUCGGCUCGUgG----------CGCU-CGUGaa--AGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 159838 | 0.66 | 0.892891 |
Target: 5'- aGAGCCGAGcCGCCGgcccaguCG-GCGCUcgcauggaUUCGu -3' miRNA: 3'- aCUCGGCUC-GUGGC-------GCuCGUGA--------AAGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 6879 | 0.67 | 0.879874 |
Target: 5'- -cAGCCaGAGCGuCCGCGAGcCGCgcagUCc -3' miRNA: 3'- acUCGG-CUCGU-GGCGCUC-GUGaa--AGc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 19092 | 0.67 | 0.872703 |
Target: 5'- gGAGCCaggacuGCACCGCGgcGGCGCg---- -3' miRNA: 3'- aCUCGGcu----CGUGGCGC--UCGUGaaagc -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 157270 | 0.67 | 0.872703 |
Target: 5'- cUGAGCCaGGCGcuguCCGCG-GUGCUgUCGg -3' miRNA: 3'- -ACUCGGcUCGU----GGCGCuCGUGAaAGC- -5' |
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24579 | 5' | -56.1 | NC_005264.1 | + | 32272 | 0.67 | 0.872703 |
Target: 5'- gGAGCCGAGagcgagacCugCGCGuAGCACa---- -3' miRNA: 3'- aCUCGGCUC--------GugGCGC-UCGUGaaagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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