miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 5' -56.1 NC_005264.1 + 34420 0.94 0.029139
Target:  5'- aUGAGCCGAGaC-CCGCGAGCACUUUCGa -3'
miRNA:   3'- -ACUCGGCUC-GuGGCGCUCGUGAAAGC- -5'
24579 5' -56.1 NC_005264.1 + 64414 0.76 0.411059
Target:  5'- -aGGCCGA-CGCCGCGGGCACgg-CGa -3'
miRNA:   3'- acUCGGCUcGUGGCGCUCGUGaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 110121 0.75 0.437505
Target:  5'- gGGGCCGAGaGCCGCc-GCGCUUUUGg -3'
miRNA:   3'- aCUCGGCUCgUGGCGcuCGUGAAAGC- -5'
24579 5' -56.1 NC_005264.1 + 72235 0.75 0.468622
Target:  5'- cGAGCCGuGGCACCGCGAcaucaugaagauccuGCGCUg--- -3'
miRNA:   3'- aCUCGGC-UCGUGGCGCU---------------CGUGAaagc -5'
24579 5' -56.1 NC_005264.1 + 112258 0.74 0.512438
Target:  5'- cGGGCUGcucAGCGCCGCGuGCGCUUc-- -3'
miRNA:   3'- aCUCGGC---UCGUGGCGCuCGUGAAagc -5'
24579 5' -56.1 NC_005264.1 + 64163 0.72 0.60128
Target:  5'- -cGGCCGgugugcaAGCGCCGCcAGCACUgggUCGa -3'
miRNA:   3'- acUCGGC-------UCGUGGCGcUCGUGAa--AGC- -5'
24579 5' -56.1 NC_005264.1 + 129632 0.72 0.612479
Target:  5'- aGAcGCCGAGCGCCGCcAGC-CUUaagCGu -3'
miRNA:   3'- aCU-CGGCUCGUGGCGcUCGuGAAa--GC- -5'
24579 5' -56.1 NC_005264.1 + 40072 0.72 0.612479
Target:  5'- cGGGCCuGGUACC-CGAGCGCU-UCGu -3'
miRNA:   3'- aCUCGGcUCGUGGcGCUCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 114909 0.71 0.660405
Target:  5'- cGAGCCGuucuccgucgauaaGGCuCCGCGGGCACa---- -3'
miRNA:   3'- aCUCGGC--------------UCGuGGCGCUCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 61453 0.71 0.663456
Target:  5'- cGGcGCCGAGUugCuCGAGCGCcgUUCGu -3'
miRNA:   3'- aCU-CGGCUCGugGcGCUCGUGa-AAGC- -5'
24579 5' -56.1 NC_005264.1 + 18067 0.71 0.663456
Target:  5'- cGAGCCaGGGCG-CGCGGGCAUUUa-- -3'
miRNA:   3'- aCUCGG-CUCGUgGCGCUCGUGAAagc -5'
24579 5' -56.1 NC_005264.1 + 85380 0.71 0.673609
Target:  5'- cGAGCCGcuguGUACCGCGAcCACg--CGg -3'
miRNA:   3'- aCUCGGCu---CGUGGCGCUcGUGaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 3751 0.71 0.683728
Target:  5'- gGGGCCucuugccgccgGGGCGCUGCGGGCcCUUggUCGa -3'
miRNA:   3'- aCUCGG-----------CUCGUGGCGCUCGuGAA--AGC- -5'
24579 5' -56.1 NC_005264.1 + 122777 0.71 0.683728
Target:  5'- gGGGCCucuugccgccgGGGCGCUGCGGGCcCUUggUCGa -3'
miRNA:   3'- aCUCGG-----------CUCGUGGCGCUCGuGAA--AGC- -5'
24579 5' -56.1 NC_005264.1 + 95336 0.7 0.723693
Target:  5'- --cGCCGGGCGCCGCGAaacGgACUcggCGg -3'
miRNA:   3'- acuCGGCUCGUGGCGCU---CgUGAaa-GC- -5'
24579 5' -56.1 NC_005264.1 + 120401 0.69 0.762404
Target:  5'- cGAGCgCGAGUGCCGC-AGCGCcgaacgCGa -3'
miRNA:   3'- aCUCG-GCUCGUGGCGcUCGUGaaa---GC- -5'
24579 5' -56.1 NC_005264.1 + 60268 0.69 0.771817
Target:  5'- cGAGCUgcgguGAGCGCCGCGucgGGCAUgacguacUCGg -3'
miRNA:   3'- aCUCGG-----CUCGUGGCGC---UCGUGaa-----AGC- -5'
24579 5' -56.1 NC_005264.1 + 101349 0.69 0.771817
Target:  5'- -uAGCCGAG-ACCGCGGGgCGCg-UCGg -3'
miRNA:   3'- acUCGGCUCgUGGCGCUC-GUGaaAGC- -5'
24579 5' -56.1 NC_005264.1 + 135187 0.69 0.781107
Target:  5'- cGGuCCGAGCGCCGCGuGGCcaaACgagUUCGc -3'
miRNA:   3'- aCUcGGCUCGUGGCGC-UCG---UGa--AAGC- -5'
24579 5' -56.1 NC_005264.1 + 87633 0.69 0.790263
Target:  5'- aGGGCCGAuGCAgCCGCGuggGGCGCg---- -3'
miRNA:   3'- aCUCGGCU-CGU-GGCGC---UCGUGaaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.