miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 5' -56.1 NC_005264.1 + 32272 0.67 0.872703
Target:  5'- gGAGCCGAGagcgagacCugCGCGuAGCACa---- -3'
miRNA:   3'- aCUCGGCUC--------GugGCGC-UCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 38243 0.67 0.872703
Target:  5'- cUGAGCCaGGCGcuguCCGCG-GUGCUgUCGg -3'
miRNA:   3'- -ACUCGGcUCGU----GGCGCuCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 65234 0.67 0.865318
Target:  5'- cUGAGCCGuAGcCGCCGCGgccgaggaagcGGUACggUUCu -3'
miRNA:   3'- -ACUCGGC-UC-GUGGCGC-----------UCGUGa-AAGc -5'
24579 5' -56.1 NC_005264.1 + 106015 0.67 0.865318
Target:  5'- cGAGCCGcuagcuagGGcCGCCGCGcAGCGCa---- -3'
miRNA:   3'- aCUCGGC--------UC-GUGGCGC-UCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 40798 0.67 0.865318
Target:  5'- aGAGCgGAGCcgcuuGCCGCGGGguCgc-CGa -3'
miRNA:   3'- aCUCGgCUCG-----UGGCGCUCguGaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 145077 0.67 0.863062
Target:  5'- cGGGCCGGGCagcucuccuuGCCGCGAacuuggcauagguuGCGCcg-CGg -3'
miRNA:   3'- aCUCGGCUCG----------UGGCGCU--------------CGUGaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 56415 0.67 0.857725
Target:  5'- cGAGCgCG-GCGCCGuCGAGC---UUCGg -3'
miRNA:   3'- aCUCG-GCuCGUGGC-GCUCGugaAAGC- -5'
24579 5' -56.1 NC_005264.1 + 120777 0.67 0.857725
Target:  5'- cUGAcGCCacGCGCCGCGGGCAacg-CGa -3'
miRNA:   3'- -ACU-CGGcuCGUGGCGCUCGUgaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 62564 0.67 0.849928
Target:  5'- -aAGCCGAGC-CCGCu-GCGCggaUCGa -3'
miRNA:   3'- acUCGGCUCGuGGCGcuCGUGaa-AGC- -5'
24579 5' -56.1 NC_005264.1 + 85649 0.67 0.849928
Target:  5'- -uGGCCGcgauGGC-CCGCGAGCGCg---- -3'
miRNA:   3'- acUCGGC----UCGuGGCGCUCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 48075 0.67 0.847551
Target:  5'- -cGGCCGAGCGgCGCaGGgacaagaacgcgcuGCGCUUUCa -3'
miRNA:   3'- acUCGGCUCGUgGCG-CU--------------CGUGAAAGc -5'
24579 5' -56.1 NC_005264.1 + 113511 0.68 0.841126
Target:  5'- cGGGCCGAGCgcgaacaGCCGCGGGaggucCUUguaCGa -3'
miRNA:   3'- aCUCGGCUCG-------UGGCGCUCgu---GAAa--GC- -5'
24579 5' -56.1 NC_005264.1 + 102926 0.68 0.833753
Target:  5'- -uGGCCGAGCugCGCgGAGCGg----- -3'
miRNA:   3'- acUCGGCUCGugGCG-CUCGUgaaagc -5'
24579 5' -56.1 NC_005264.1 + 54250 0.68 0.833753
Target:  5'- -aGGCUgcuaGAGCGCCGCaggGAGCGCU-UCGc -3'
miRNA:   3'- acUCGG----CUCGUGGCG---CUCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 76067 0.68 0.833753
Target:  5'- aGAcGCCGcGaCGCCGCGAGCG---UCGa -3'
miRNA:   3'- aCU-CGGCuC-GUGGCGCUCGUgaaAGC- -5'
24579 5' -56.1 NC_005264.1 + 130910 0.68 0.816849
Target:  5'- aGAGCCGA--GCCGCGAGgGCcgUgGg -3'
miRNA:   3'- aCUCGGCUcgUGGCGCUCgUGaaAgC- -5'
24579 5' -56.1 NC_005264.1 + 92915 0.68 0.816849
Target:  5'- gGAGCCgGGGgAUCGUGAGCAaggagugUCGg -3'
miRNA:   3'- aCUCGG-CUCgUGGCGCUCGUgaa----AGC- -5'
24579 5' -56.1 NC_005264.1 + 11884 0.68 0.816849
Target:  5'- aGAGCCGA--GCCGCGAGgGCcgUgGg -3'
miRNA:   3'- aCUCGGCUcgUGGCGCUCgUGaaAgC- -5'
24579 5' -56.1 NC_005264.1 + 123812 0.68 0.808143
Target:  5'- -aAGgCGAGuCACCGCcGGUACUUUCu -3'
miRNA:   3'- acUCgGCUC-GUGGCGcUCGUGAAAGc -5'
24579 5' -56.1 NC_005264.1 + 97424 0.68 0.808143
Target:  5'- -cGGCaguGAGCGCUGCGGGCGCcgccgCGg -3'
miRNA:   3'- acUCGg--CUCGUGGCGCUCGUGaaa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.