miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 5' -56.1 NC_005264.1 + 3751 0.71 0.683728
Target:  5'- gGGGCCucuugccgccgGGGCGCUGCGGGCcCUUggUCGa -3'
miRNA:   3'- aCUCGG-----------CUCGUGGCGCUCGuGAA--AGC- -5'
24579 5' -56.1 NC_005264.1 + 6879 0.67 0.879874
Target:  5'- -cAGCCaGAGCGuCCGCGAGcCGCgcagUCc -3'
miRNA:   3'- acUCGG-CUCGU-GGCGCUC-GUGaa--AGc -5'
24579 5' -56.1 NC_005264.1 + 11884 0.68 0.816849
Target:  5'- aGAGCCGA--GCCGCGAGgGCcgUgGg -3'
miRNA:   3'- aCUCGGCUcgUGGCGCUCgUGaaAgC- -5'
24579 5' -56.1 NC_005264.1 + 18067 0.71 0.663456
Target:  5'- cGAGCCaGGGCG-CGCGGGCAUUUa-- -3'
miRNA:   3'- aCUCGG-CUCGUgGCGCUCGUGAAagc -5'
24579 5' -56.1 NC_005264.1 + 19092 0.67 0.872703
Target:  5'- gGAGCCaggacuGCACCGCGgcGGCGCg---- -3'
miRNA:   3'- aCUCGGcu----CGUGGCGC--UCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 25143 0.66 0.91816
Target:  5'- -cGGCCGAGUaguugGCCGUGAGCGaggaCGu -3'
miRNA:   3'- acUCGGCUCG-----UGGCGCUCGUgaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 31166 0.66 0.920414
Target:  5'- cGAGCCGAcGUGCCgccaacggucuggcgGCGGGCACc---- -3'
miRNA:   3'- aCUCGGCU-CGUGG---------------CGCUCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 32272 0.67 0.872703
Target:  5'- gGAGCCGAGagcgagacCugCGCGuAGCACa---- -3'
miRNA:   3'- aCUCGGCUC--------GugGCGC-UCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 33252 0.66 0.900054
Target:  5'- cGcGCCGcAGCGCCuGCaGAGCGCgcaagaUCGg -3'
miRNA:   3'- aCuCGGC-UCGUGG-CG-CUCGUGaa----AGC- -5'
24579 5' -56.1 NC_005264.1 + 34420 0.94 0.029139
Target:  5'- aUGAGCCGAGaC-CCGCGAGCACUUUCGa -3'
miRNA:   3'- -ACUCGGCUC-GuGGCGCUCGUGAAAGC- -5'
24579 5' -56.1 NC_005264.1 + 34951 0.66 0.91816
Target:  5'- gUGGGCCGAGCgaguACUuaGAGCgACgcUCGc -3'
miRNA:   3'- -ACUCGGCUCG----UGGcgCUCG-UGaaAGC- -5'
24579 5' -56.1 NC_005264.1 + 38243 0.67 0.872703
Target:  5'- cUGAGCCaGGCGcuguCCGCG-GUGCUgUCGg -3'
miRNA:   3'- -ACUCGGcUCGU----GGCGCuCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 40072 0.72 0.612479
Target:  5'- cGGGCCuGGUACC-CGAGCGCU-UCGu -3'
miRNA:   3'- aCUCGGcUCGUGGcGCUCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 40798 0.67 0.865318
Target:  5'- aGAGCgGAGCcgcuuGCCGCGGGguCgc-CGa -3'
miRNA:   3'- aCUCGgCUCG-----UGGCGCUCguGaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 45916 0.66 0.893553
Target:  5'- gGAGCCGAGCAgCuaguuucgauGCGGuGCAUgacgUCGu -3'
miRNA:   3'- aCUCGGCUCGUgG----------CGCU-CGUGaa--AGC- -5'
24579 5' -56.1 NC_005264.1 + 48075 0.67 0.847551
Target:  5'- -cGGCCGAGCGgCGCaGGgacaagaacgcgcuGCGCUUUCa -3'
miRNA:   3'- acUCGGCUCGUgGCG-CU--------------CGUGAAAGc -5'
24579 5' -56.1 NC_005264.1 + 50318 0.66 0.912359
Target:  5'- -cGGCCuGGaGCCGCGAGUACgcggcgUCGa -3'
miRNA:   3'- acUCGGcUCgUGGCGCUCGUGaa----AGC- -5'
24579 5' -56.1 NC_005264.1 + 54250 0.68 0.833753
Target:  5'- -aGGCUgcuaGAGCGCCGCaggGAGCGCU-UCGc -3'
miRNA:   3'- acUCGG----CUCGUGGCG---CUCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 56415 0.67 0.857725
Target:  5'- cGAGCgCG-GCGCCGuCGAGC---UUCGg -3'
miRNA:   3'- aCUCG-GCuCGUGGC-GCUCGugaAAGC- -5'
24579 5' -56.1 NC_005264.1 + 60268 0.69 0.771817
Target:  5'- cGAGCUgcgguGAGCGCCGCGucgGGCAUgacguacUCGg -3'
miRNA:   3'- aCUCGG-----CUCGUGGCGC---UCGUGaa-----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.