miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 5' -56.1 NC_005264.1 + 34420 0.94 0.029139
Target:  5'- aUGAGCCGAGaC-CCGCGAGCACUUUCGa -3'
miRNA:   3'- -ACUCGGCUC-GuGGCGCUCGUGAAAGC- -5'
24579 5' -56.1 NC_005264.1 + 62564 0.67 0.849928
Target:  5'- -aAGCCGAGC-CCGCu-GCGCggaUCGa -3'
miRNA:   3'- acUCGGCUCGuGGCGcuCGUGaa-AGC- -5'
24579 5' -56.1 NC_005264.1 + 40798 0.67 0.865318
Target:  5'- aGAGCgGAGCcgcuuGCCGCGGGguCgc-CGa -3'
miRNA:   3'- aCUCGgCUCG-----UGGCGCUCguGaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 31166 0.66 0.920414
Target:  5'- cGAGCCGAcGUGCCgccaacggucuggcgGCGGGCACc---- -3'
miRNA:   3'- aCUCGGCU-CGUGG---------------CGCUCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 40072 0.72 0.612479
Target:  5'- cGGGCCuGGUACC-CGAGCGCU-UCGu -3'
miRNA:   3'- aCUCGGcUCGUGGcGCUCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 61453 0.71 0.663456
Target:  5'- cGGcGCCGAGUugCuCGAGCGCcgUUCGu -3'
miRNA:   3'- aCU-CGGCUCGugGcGCUCGUGa-AAGC- -5'
24579 5' -56.1 NC_005264.1 + 122777 0.71 0.683728
Target:  5'- gGGGCCucuugccgccgGGGCGCUGCGGGCcCUUggUCGa -3'
miRNA:   3'- aCUCGG-----------CUCGUGGCGCUCGuGAA--AGC- -5'
24579 5' -56.1 NC_005264.1 + 60268 0.69 0.771817
Target:  5'- cGAGCUgcgguGAGCGCCGCGucgGGCAUgacguacUCGg -3'
miRNA:   3'- aCUCGG-----CUCGUGGCGC---UCGUGaa-----AGC- -5'
24579 5' -56.1 NC_005264.1 + 130910 0.68 0.816849
Target:  5'- aGAGCCGA--GCCGCGAGgGCcgUgGg -3'
miRNA:   3'- aCUCGGCUcgUGGCGCUCgUGaaAgC- -5'
24579 5' -56.1 NC_005264.1 + 85649 0.67 0.849928
Target:  5'- -uGGCCGcgauGGC-CCGCGAGCGCg---- -3'
miRNA:   3'- acUCGGC----UCGuGGCGCUCGUGaaagc -5'
24579 5' -56.1 NC_005264.1 + 102926 0.68 0.833753
Target:  5'- -uGGCCGAGCugCGCgGAGCGg----- -3'
miRNA:   3'- acUCGGCUCGugGCG-CUCGUgaaagc -5'
24579 5' -56.1 NC_005264.1 + 97424 0.68 0.808143
Target:  5'- -cGGCaguGAGCGCUGCGGGCGCcgccgCGg -3'
miRNA:   3'- acUCGg--CUCGUGGCGCUCGUGaaa--GC- -5'
24579 5' -56.1 NC_005264.1 + 64414 0.76 0.411059
Target:  5'- -aGGCCGA-CGCCGCGGGCACgg-CGa -3'
miRNA:   3'- acUCGGCUcGUGGCGCUCGUGaaaGC- -5'
24579 5' -56.1 NC_005264.1 + 54250 0.68 0.833753
Target:  5'- -aGGCUgcuaGAGCGCCGCaggGAGCGCU-UCGc -3'
miRNA:   3'- acUCGG----CUCGUGGCG---CUCGUGAaAGC- -5'
24579 5' -56.1 NC_005264.1 + 72235 0.75 0.468622
Target:  5'- cGAGCCGuGGCACCGCGAcaucaugaagauccuGCGCUg--- -3'
miRNA:   3'- aCUCGGC-UCGUGGCGCU---------------CGUGAaagc -5'
24579 5' -56.1 NC_005264.1 + 135187 0.69 0.781107
Target:  5'- cGGuCCGAGCGCCGCGuGGCcaaACgagUUCGc -3'
miRNA:   3'- aCUcGGCUCGUGGCGC-UCG---UGa--AAGC- -5'
24579 5' -56.1 NC_005264.1 + 48075 0.67 0.847551
Target:  5'- -cGGCCGAGCGgCGCaGGgacaagaacgcgcuGCGCUUUCa -3'
miRNA:   3'- acUCGGCUCGUgGCG-CU--------------CGUGAAAGc -5'
24579 5' -56.1 NC_005264.1 + 56415 0.67 0.857725
Target:  5'- cGAGCgCG-GCGCCGuCGAGC---UUCGg -3'
miRNA:   3'- aCUCG-GCuCGUGGC-GCUCGugaAAGC- -5'
24579 5' -56.1 NC_005264.1 + 64163 0.72 0.60128
Target:  5'- -cGGCCGgugugcaAGCGCCGCcAGCACUgggUCGa -3'
miRNA:   3'- acUCGGC-------UCGUGGCGcUCGUGAa--AGC- -5'
24579 5' -56.1 NC_005264.1 + 18067 0.71 0.663456
Target:  5'- cGAGCCaGGGCG-CGCGGGCAUUUa-- -3'
miRNA:   3'- aCUCGG-CUCGUgGCGCUCGUGAAagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.