miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24580 5' -47.6 NC_005264.1 + 154275 0.66 0.999856
Target:  5'- aCGggGAGAUAC-CUAGaucuggauuuUGGGGCu--- -3'
miRNA:   3'- -GCuuCUUUAUGaGGUU----------ACCCCGcaac -5'
24580 5' -47.6 NC_005264.1 + 124120 0.66 0.999695
Target:  5'- gGGAGggGUcCUCUAcgccugGGGGCGa-- -3'
miRNA:   3'- gCUUCuuUAuGAGGUua----CCCCGCaac -5'
24580 5' -47.6 NC_005264.1 + 113164 0.66 0.999695
Target:  5'- gCGAGGA---GCUCCaAAUGGcGGCaacuGUUGa -3'
miRNA:   3'- -GCUUCUuuaUGAGG-UUACC-CCG----CAAC- -5'
24580 5' -47.6 NC_005264.1 + 5093 0.66 0.999695
Target:  5'- gGGAGggGUcCUCUAcgccugGGGGCGa-- -3'
miRNA:   3'- gCUUCuuUAuGAGGUua----CCCCGCaac -5'
24580 5' -47.6 NC_005264.1 + 46246 0.67 0.999397
Target:  5'- cCGGAGAAGaccGCgCCug-GGGGCGUUu -3'
miRNA:   3'- -GCUUCUUUa--UGaGGuuaCCCCGCAAc -5'
24580 5' -47.6 NC_005264.1 + 25873 0.67 0.999079
Target:  5'- -cAAGAAAgacugcagACUCCGcacaGUGGGGCGcUGc -3'
miRNA:   3'- gcUUCUUUa-------UGAGGU----UACCCCGCaAC- -5'
24580 5' -47.6 NC_005264.1 + 9443 0.69 0.996621
Target:  5'- gGAGGAAGaACUCCuggGUGGGGUc--- -3'
miRNA:   3'- gCUUCUUUaUGAGGu--UACCCCGcaac -5'
24580 5' -47.6 NC_005264.1 + 128470 0.69 0.996621
Target:  5'- gGAGGAAGaACUCCuggGUGGGGUc--- -3'
miRNA:   3'- gCUUCUUUaUGAGGu--UACCCCGcaac -5'
24580 5' -47.6 NC_005264.1 + 154951 0.7 0.993649
Target:  5'- gCGAGGAGAc-CUCCGAcgccgcaucUGGGGCGc-- -3'
miRNA:   3'- -GCUUCUUUauGAGGUU---------ACCCCGCaac -5'
24580 5' -47.6 NC_005264.1 + 25777 0.7 0.989862
Target:  5'- gGAAGGAcuggagucuugcucGUGCUCCuauAUGGGGCu--- -3'
miRNA:   3'- gCUUCUU--------------UAUGAGGu--UACCCCGcaac -5'
24580 5' -47.6 NC_005264.1 + 31500 0.72 0.976968
Target:  5'- aCGAGGAAGgucaggcgGCUCCAGgcucGGGCGggGa -3'
miRNA:   3'- -GCUUCUUUa-------UGAGGUUac--CCCGCaaC- -5'
24580 5' -47.6 NC_005264.1 + 150527 0.72 0.976968
Target:  5'- aCGAGGAAGgucaggcgGCUCCAGgcucGGGCGggGa -3'
miRNA:   3'- -GCUUCUUUa-------UGAGGUUac--CCCGCaaC- -5'
24580 5' -47.6 NC_005264.1 + 63034 0.74 0.939833
Target:  5'- gGggGAAAUACUCUAcgccaGGGGCGc-- -3'
miRNA:   3'- gCuuCUUUAUGAGGUua---CCCCGCaac -5'
24580 5' -47.6 NC_005264.1 + 82983 0.75 0.917826
Target:  5'- cCGAAGucAAAUGgUCUGAUGGGGCGg-- -3'
miRNA:   3'- -GCUUC--UUUAUgAGGUUACCCCGCaac -5'
24580 5' -47.6 NC_005264.1 + 76637 0.78 0.790173
Target:  5'- aGAGGAuAUggcACUCCAGUGcGGGCGUa- -3'
miRNA:   3'- gCUUCUuUA---UGAGGUUAC-CCCGCAac -5'
24580 5' -47.6 NC_005264.1 + 34575 1.1 0.016761
Target:  5'- gCGAAGAAAUACUCCAAUGGGGCGUUGa -3'
miRNA:   3'- -GCUUCUUUAUGAGGUUACCCCGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.