miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24581 3' -61.1 NC_005264.1 + 144803 0.66 0.756814
Target:  5'- cGCCGCuuCGCGucGGC-ACGCacuuggUGUCGGa -3'
miRNA:   3'- -CGGCG--GCGCcuCCGuUGCG------ACAGCCc -5'
24581 3' -61.1 NC_005264.1 + 70671 0.66 0.756814
Target:  5'- cGgCGCCGcCGGcAGGCAauuuuuACGCccgCGGGc -3'
miRNA:   3'- -CgGCGGC-GCC-UCCGU------UGCGacaGCCC- -5'
24581 3' -61.1 NC_005264.1 + 132348 0.66 0.756814
Target:  5'- gGCCG-CGCGGA-GCAggaggagagggGCGCgaggaugaacGUCGGGg -3'
miRNA:   3'- -CGGCgGCGCCUcCGU-----------UGCGa---------CAGCCC- -5'
24581 3' -61.1 NC_005264.1 + 91558 0.66 0.756814
Target:  5'- gGgCGCgGCGGGGGgcaCGAgGCUuGUCGcGGa -3'
miRNA:   3'- -CgGCGgCGCCUCC---GUUgCGA-CAGC-CC- -5'
24581 3' -61.1 NC_005264.1 + 106943 0.66 0.756814
Target:  5'- aGCUGCgGCGGccgcaggaucugAGGCcuguuGCGCUGUCu-- -3'
miRNA:   3'- -CGGCGgCGCC------------UCCGu----UGCGACAGccc -5'
24581 3' -61.1 NC_005264.1 + 13321 0.66 0.756814
Target:  5'- gGCCG-CGCGGA-GCAggaggagagggGCGCgaggaugaacGUCGGGg -3'
miRNA:   3'- -CGGCgGCGCCUcCGU-----------UGCGa---------CAGCCC- -5'
24581 3' -61.1 NC_005264.1 + 148895 0.66 0.756814
Target:  5'- cGUCGCCGCGu-GGCAuagacuUGCUG-CGGc -3'
miRNA:   3'- -CGGCGGCGCcuCCGUu-----GCGACaGCCc -5'
24581 3' -61.1 NC_005264.1 + 66212 0.66 0.75134
Target:  5'- cGCCuCCGCGGccagcgaaggacuuGGCGA-GCUG-CGGGc -3'
miRNA:   3'- -CGGcGGCGCCu-------------CCGUUgCGACaGCCC- -5'
24581 3' -61.1 NC_005264.1 + 149404 0.66 0.747672
Target:  5'- cGCCGCCGCGucgcgucucGGCGGCgGCgGUCGc- -3'
miRNA:   3'- -CGGCGGCGCcu-------CCGUUG-CGaCAGCcc -5'
24581 3' -61.1 NC_005264.1 + 46585 0.66 0.747672
Target:  5'- aGUCGCgcgUGCGGAGGCucuguCcCUG-CGGGg -3'
miRNA:   3'- -CGGCG---GCGCCUCCGuu---GcGACaGCCC- -5'
24581 3' -61.1 NC_005264.1 + 124303 0.66 0.747672
Target:  5'- cGCgGCCggacgGCGG-GGCGGCGgCUGacccgUGGGg -3'
miRNA:   3'- -CGgCGG-----CGCCuCCGUUGC-GACa----GCCC- -5'
24581 3' -61.1 NC_005264.1 + 138231 0.66 0.747672
Target:  5'- cGCUGCUGUcccccGGAGuaGagGCGCUGUUGGu -3'
miRNA:   3'- -CGGCGGCG-----CCUCcgU--UGCGACAGCCc -5'
24581 3' -61.1 NC_005264.1 + 5276 0.66 0.747672
Target:  5'- cGCgGCCggacgGCGG-GGCGGCGgCUGacccgUGGGg -3'
miRNA:   3'- -CGgCGG-----CGCCuCCGUUGC-GACa----GCCC- -5'
24581 3' -61.1 NC_005264.1 + 93461 0.66 0.747672
Target:  5'- gGUCGCCGCGGAGaggauuuauacGCGacACGCgccacaaaCGGGc -3'
miRNA:   3'- -CGGCGGCGCCUC-----------CGU--UGCGaca-----GCCC- -5'
24581 3' -61.1 NC_005264.1 + 30377 0.66 0.747672
Target:  5'- cGCCGCCGCGucgcgucucGGCGGCgGCgGUCGc- -3'
miRNA:   3'- -CGGCGGCGCcu-------CCGUUG-CGaCAGCcc -5'
24581 3' -61.1 NC_005264.1 + 10107 0.66 0.73844
Target:  5'- gGCCGUguccgugaCGUGGAGGCAACucccaCUGcCGaGGa -3'
miRNA:   3'- -CGGCG--------GCGCCUCCGUUGc----GACaGC-CC- -5'
24581 3' -61.1 NC_005264.1 + 6728 0.66 0.73844
Target:  5'- -gCGUCGCGGuacuccgcGGCGugGCg--CGGGa -3'
miRNA:   3'- cgGCGGCGCCu-------CCGUugCGacaGCCC- -5'
24581 3' -61.1 NC_005264.1 + 35759 0.66 0.729123
Target:  5'- uGCgGCCGCGacgugggugaaGAGGCGgagggcgcggugGCGCcGUCGuGGc -3'
miRNA:   3'- -CGgCGGCGC-----------CUCCGU------------UGCGaCAGC-CC- -5'
24581 3' -61.1 NC_005264.1 + 154785 0.66 0.729123
Target:  5'- uGCgGCCGCGacgugggugaaGAGGCGgagggcgcggugGCGCcGUCGuGGc -3'
miRNA:   3'- -CGgCGGCGC-----------CUCCGU------------UGCGaCAGC-CC- -5'
24581 3' -61.1 NC_005264.1 + 142972 0.66 0.729123
Target:  5'- gGCCGCgGCGGucucucGGGCAugAgGCgggcGUgGGGa -3'
miRNA:   3'- -CGGCGgCGCC------UCCGU--UgCGa---CAgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.