miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24581 5' -54.7 NC_005264.1 + 2509 0.66 0.957426
Target:  5'- uCGCGCGACu---UCAGCgCgggGGGCGACu -3'
miRNA:   3'- -GCGCGCUGcagcAGUCG-Ga--UCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 40954 0.66 0.957426
Target:  5'- uCGCGCGGCuugcUCGUaaCAGUCUGGAagcuuGCg -3'
miRNA:   3'- -GCGCGCUGc---AGCA--GUCGGAUCUgu---UG- -5'
24581 5' -54.7 NC_005264.1 + 121536 0.66 0.957426
Target:  5'- uCGCGCGACu---UCAGCgCgggGGGCGACu -3'
miRNA:   3'- -GCGCGCUGcagcAGUCG-Ga--UCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 86775 0.66 0.957426
Target:  5'- aCGCucGCGGCGUCG-CGGCguCUcuGCAACg -3'
miRNA:   3'- -GCG--CGCUGCAGCaGUCG--GAucUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 86592 0.66 0.953575
Target:  5'- uGCGUGAgacacgcgGUCGUCGcGCCUcgcGACAGCc -3'
miRNA:   3'- gCGCGCUg-------CAGCAGU-CGGAu--CUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 103054 0.66 0.953575
Target:  5'- -cCGCGGCGgacaCGGCCgUGGACAGCc -3'
miRNA:   3'- gcGCGCUGCagcaGUCGG-AUCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 96498 0.66 0.953575
Target:  5'- gGCGa-GCGUCGUgCAGC--AGACAGCc -3'
miRNA:   3'- gCGCgcUGCAGCA-GUCGgaUCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 46438 0.66 0.949495
Target:  5'- uGCGCu-CGaCGUCGGCCUGcGGCuuuuGCg -3'
miRNA:   3'- gCGCGcuGCaGCAGUCGGAU-CUGu---UG- -5'
24581 5' -54.7 NC_005264.1 + 155774 0.66 0.949495
Target:  5'- aGCGCGACGgCGcCGGCC--GGCGc- -3'
miRNA:   3'- gCGCGCUGCaGCaGUCGGauCUGUug -5'
24581 5' -54.7 NC_005264.1 + 91887 0.66 0.949495
Target:  5'- --aGCGGgGUgGUUGGCCgcGGCAGCg -3'
miRNA:   3'- gcgCGCUgCAgCAGUCGGauCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 36748 0.66 0.949495
Target:  5'- aGCGCGACGgCGcCGGCC--GGCGc- -3'
miRNA:   3'- gCGCGCUGCaGCaGUCGGauCUGUug -5'
24581 5' -54.7 NC_005264.1 + 17413 0.66 0.949495
Target:  5'- gGUGCGGCGUgaCGUCuaGGCCUAGu---- -3'
miRNA:   3'- gCGCGCUGCA--GCAG--UCGGAUCuguug -5'
24581 5' -54.7 NC_005264.1 + 82177 0.66 0.949075
Target:  5'- cCGUGCGGCcgGUCGgcggCGGCCaucguauUAGACggUa -3'
miRNA:   3'- -GCGCGCUG--CAGCa---GUCGG-------AUCUGuuG- -5'
24581 5' -54.7 NC_005264.1 + 158089 0.66 0.947799
Target:  5'- uCGCGCGGCGguccacccccggaCGcCGGCUcggcGGGCAGCg -3'
miRNA:   3'- -GCGCGCUGCa------------GCaGUCGGa---UCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 39062 0.66 0.947799
Target:  5'- uCGCGCGGCGguccacccccggaCGcCGGCUcggcGGGCAGCg -3'
miRNA:   3'- -GCGCGCUGCa------------GCaGUCGGa---UCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 101932 0.66 0.945184
Target:  5'- gCGCGCGaaacugGCGgCGUCGGCCccaccGCGGCg -3'
miRNA:   3'- -GCGCGC------UGCaGCAGUCGGauc--UGUUG- -5'
24581 5' -54.7 NC_005264.1 + 110851 0.66 0.945184
Target:  5'- gCGCGCGACGUCcgcaaUAGCU---ACAGCg -3'
miRNA:   3'- -GCGCGCUGCAGca---GUCGGaucUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 79885 0.66 0.945184
Target:  5'- gGCGCGGCGgcgacCGUC-GC--AGGCGACg -3'
miRNA:   3'- gCGCGCUGCa----GCAGuCGgaUCUGUUG- -5'
24581 5' -54.7 NC_005264.1 + 63847 0.66 0.940638
Target:  5'- gGCGCGGuCGuuUCGUCAGgCCgcucACAACg -3'
miRNA:   3'- gCGCGCU-GC--AGCAGUC-GGauc-UGUUG- -5'
24581 5' -54.7 NC_005264.1 + 5151 0.67 0.935856
Target:  5'- gGCGuCGcCGUCGUCgucggugccGGCCUcgucGGACAAg -3'
miRNA:   3'- gCGC-GCuGCAGCAG---------UCGGA----UCUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.