miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24582 3' -64.3 NC_005264.1 + 157815 0.66 0.553654
Target:  5'- cGCGGaaccuCGUGGCCuCCUCUGCGcaaACCGc -3'
miRNA:   3'- uCGCC-----GUACCGGcGGAGGCGCc--UGGU- -5'
24582 3' -64.3 NC_005264.1 + 79126 0.66 0.553654
Target:  5'- cGGCGGCGUGcGCuUGCCccuucUCCGUGGuuCu -3'
miRNA:   3'- -UCGCCGUAC-CG-GCGG-----AGGCGCCugGu -5'
24582 3' -64.3 NC_005264.1 + 11650 0.66 0.553654
Target:  5'- cGCGGCAgGGCUGCUgucgucgUCGCGcaauucGACCGu -3'
miRNA:   3'- uCGCCGUaCCGGCGGa------GGCGC------CUGGU- -5'
24582 3' -64.3 NC_005264.1 + 124241 0.66 0.553654
Target:  5'- cGCGGCGaGGCgaaGCUcuucuUCCGCGG-CCu -3'
miRNA:   3'- uCGCCGUaCCGg--CGG-----AGGCGCCuGGu -5'
24582 3' -64.3 NC_005264.1 + 57578 0.66 0.553654
Target:  5'- gAGCGGUuucAUGGCCaugGCucuaaacguuugCUCCGCGG-CCu -3'
miRNA:   3'- -UCGCCG---UACCGG---CG------------GAGGCGCCuGGu -5'
24582 3' -64.3 NC_005264.1 + 5214 0.66 0.553654
Target:  5'- cGCGGCGaGGCgaaGCUcuucuUCCGCGG-CCu -3'
miRNA:   3'- uCGCCGUaCCGg--CGG-----AGGCGCCuGGu -5'
24582 3' -64.3 NC_005264.1 + 59754 0.66 0.553654
Target:  5'- gGGCGGC--GGCUGCga-CGCGGACg- -3'
miRNA:   3'- -UCGCCGuaCCGGCGgagGCGCCUGgu -5'
24582 3' -64.3 NC_005264.1 + 116420 0.66 0.551756
Target:  5'- cGCGGCA-GGUCGCUgggggcgucuggCCGCGGGg-- -3'
miRNA:   3'- uCGCCGUaCCGGCGGa-----------GGCGCCUggu -5'
24582 3' -64.3 NC_005264.1 + 46742 0.66 0.544184
Target:  5'- gAGCGGCAacGUC-CUUCCGUcgcaGGACCAg -3'
miRNA:   3'- -UCGCCGUacCGGcGGAGGCG----CCUGGU- -5'
24582 3' -64.3 NC_005264.1 + 67483 0.66 0.538527
Target:  5'- uGGCGGCAcGcGCCGCCcgucggccccauugCCuCGGAUCAc -3'
miRNA:   3'- -UCGCCGUaC-CGGCGGa-------------GGcGCCUGGU- -5'
24582 3' -64.3 NC_005264.1 + 99799 0.66 0.531016
Target:  5'- aAGCGGCcgaggcgAUGGUCGCCgaccCCGgGGuaaggcuggagugcGCCAa -3'
miRNA:   3'- -UCGCCG-------UACCGGCGGa---GGCgCC--------------UGGU- -5'
24582 3' -64.3 NC_005264.1 + 113455 0.66 0.525408
Target:  5'- gAGCGGgGUcGGaCCGaCC-CCGCGGucguGCCAc -3'
miRNA:   3'- -UCGCCgUA-CC-GGC-GGaGGCGCC----UGGU- -5'
24582 3' -64.3 NC_005264.1 + 26367 0.66 0.525408
Target:  5'- cGCGGCAggcugcgcgGcGCCGUCUCUgaGCGcGGCCu -3'
miRNA:   3'- uCGCCGUa--------C-CGGCGGAGG--CGC-CUGGu -5'
24582 3' -64.3 NC_005264.1 + 128202 0.66 0.525408
Target:  5'- cGCGaCcgGUGGCCGCgaacaccCCGCGGGCCu -3'
miRNA:   3'- uCGCcG--UACCGGCGga-----GGCGCCUGGu -5'
24582 3' -64.3 NC_005264.1 + 44781 0.66 0.516112
Target:  5'- cGCGGCGaucGuuGCCgacgCCGCGGucGCCGc -3'
miRNA:   3'- uCGCCGUac-CggCGGa---GGCGCC--UGGU- -5'
24582 3' -64.3 NC_005264.1 + 126288 0.66 0.516112
Target:  5'- aGGCGGCcauGCCGCUUUcgggCGCGcGGCCGa -3'
miRNA:   3'- -UCGCCGuacCGGCGGAG----GCGC-CUGGU- -5'
24582 3' -64.3 NC_005264.1 + 92495 0.66 0.516112
Target:  5'- cGGUGGCgGUGcGCCugGCCaucuguggaUCCGCGGACgAg -3'
miRNA:   3'- -UCGCCG-UAC-CGG--CGG---------AGGCGCCUGgU- -5'
24582 3' -64.3 NC_005264.1 + 54343 0.66 0.516112
Target:  5'- cGCGGCGuuuaUGGCgaGCCUuagaagcgUCGCGcGGCCAc -3'
miRNA:   3'- uCGCCGU----ACCGg-CGGA--------GGCGC-CUGGU- -5'
24582 3' -64.3 NC_005264.1 + 80544 0.66 0.516112
Target:  5'- cGGCGGCAUucuauauuCCGuUCUCgGCGGACCc -3'
miRNA:   3'- -UCGCCGUAcc------GGC-GGAGgCGCCUGGu -5'
24582 3' -64.3 NC_005264.1 + 104963 0.66 0.513335
Target:  5'- cGCGcCAUGGCCGCCggugCCGcCGucucuggcgcugacGACCGu -3'
miRNA:   3'- uCGCcGUACCGGCGGa---GGC-GC--------------CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.