miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24582 5' -46.1 NC_005264.1 + 67273 0.66 0.999981
Target:  5'- uGUGGUAUAGAcg-ACGCgaaUGGGCGg -3'
miRNA:   3'- cUACCAUAUUUcuaUGCGga-ACUCGC- -5'
24582 5' -46.1 NC_005264.1 + 101573 0.66 0.999974
Target:  5'- -cUGGaAUAcGGGUACGCCgaggcgcgccgUGAGCu -3'
miRNA:   3'- cuACCaUAUuUCUAUGCGGa----------ACUCGc -5'
24582 5' -46.1 NC_005264.1 + 3609 0.66 0.999965
Target:  5'- cGUGGUGgacGGuggGCGCUgUGGGCGg -3'
miRNA:   3'- cUACCAUauuUCua-UGCGGaACUCGC- -5'
24582 5' -46.1 NC_005264.1 + 44432 0.66 0.999965
Target:  5'- uGAUGGg--GAAGAUG-GCC--GAGCGg -3'
miRNA:   3'- -CUACCauaUUUCUAUgCGGaaCUCGC- -5'
24582 5' -46.1 NC_005264.1 + 97078 0.67 0.999915
Target:  5'- --aGGUAaaauaUAAGGGUGCGCCggccgacGGCGg -3'
miRNA:   3'- cuaCCAU-----AUUUCUAUGCGGaac----UCGC- -5'
24582 5' -46.1 NC_005264.1 + 86108 0.68 0.999603
Target:  5'- --cGGc--GAAGAUGCGCCgcgcaccaUGAGCGu -3'
miRNA:   3'- cuaCCauaUUUCUAUGCGGa-------ACUCGC- -5'
24582 5' -46.1 NC_005264.1 + 47287 0.69 0.998564
Target:  5'- uGUGGUGUGGAGAU-UGCCaUGAuggcaGCGg -3'
miRNA:   3'- cUACCAUAUUUCUAuGCGGaACU-----CGC- -5'
24582 5' -46.1 NC_005264.1 + 131595 0.7 0.997899
Target:  5'- --aGGUGUGGAGGgagcgGCGCgCgUGGGCGc -3'
miRNA:   3'- cuaCCAUAUUUCUa----UGCG-GaACUCGC- -5'
24582 5' -46.1 NC_005264.1 + 90676 0.7 0.996995
Target:  5'- --cGGcUAUGAucGAgucuaGCGCCUUGAGCGc -3'
miRNA:   3'- cuaCC-AUAUUu-CUa----UGCGGAACUCGC- -5'
24582 5' -46.1 NC_005264.1 + 147229 0.7 0.996435
Target:  5'- aGGUGGgcacgAGAGAUAUGCCg-GAGCc -3'
miRNA:   3'- -CUACCaua--UUUCUAUGCGGaaCUCGc -5'
24582 5' -46.1 NC_005264.1 + 52217 0.71 0.994732
Target:  5'- cGGUGGcgcgagcuGGUACGCCUUGAaaGCGa -3'
miRNA:   3'- -CUACCauauuu--CUAUGCGGAACU--CGC- -5'
24582 5' -46.1 NC_005264.1 + 36596 1.09 0.026322
Target:  5'- gGAUGGUAUAAAGAUACGCCUUGAGCGc -3'
miRNA:   3'- -CUACCAUAUUUCUAUGCGGAACUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.