miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24583 3' -56.5 NC_005264.1 + 15150 0.66 0.918993
Target:  5'- uGCA-CCGCCgcgUCUCUgGACGacCGAGcGAc -3'
miRNA:   3'- -UGUgGGCGGa--AGAGAgCUGU--GCUC-CU- -5'
24583 3' -56.5 NC_005264.1 + 70163 0.66 0.903661
Target:  5'- gGCGgCCGCgUagguucaggaacuccUCUUUgCGGCGCGAGGGc -3'
miRNA:   3'- -UGUgGGCGgA---------------AGAGA-GCUGUGCUCCU- -5'
24583 3' -56.5 NC_005264.1 + 89035 0.66 0.901164
Target:  5'- gGCACUCGCCUguguaguaguaCUCU-GACGCcAGGAa -3'
miRNA:   3'- -UGUGGGCGGAa----------GAGAgCUGUGcUCCU- -5'
24583 3' -56.5 NC_005264.1 + 42037 0.66 0.901164
Target:  5'- --cCCCuCCUccgugUCUUUcCGGCACGAGGAg -3'
miRNA:   3'- uguGGGcGGA-----AGAGA-GCUGUGCUCCU- -5'
24583 3' -56.5 NC_005264.1 + 161064 0.66 0.901164
Target:  5'- --cCCCuCCUccgugUCUUUcCGGCACGAGGAg -3'
miRNA:   3'- uguGGGcGGA-----AGAGA-GCUGUGCUCCU- -5'
24583 3' -56.5 NC_005264.1 + 26499 0.66 0.899268
Target:  5'- aGCGCCCGUauaauaUCUCUCcccgcggucuuucgGACACG-GGAu -3'
miRNA:   3'- -UGUGGGCGga----AGAGAG--------------CUGUGCuCCU- -5'
24583 3' -56.5 NC_005264.1 + 25644 0.66 0.894764
Target:  5'- cGCGCuCCGCgUUUUCcucaaUCGGCACGucuGGGg -3'
miRNA:   3'- -UGUG-GGCGgAAGAG-----AGCUGUGCu--CCU- -5'
24583 3' -56.5 NC_005264.1 + 146801 0.66 0.88814
Target:  5'- cGCuCCCGUCUUCcCUCGACugcACgGAGGc -3'
miRNA:   3'- -UGuGGGCGGAAGaGAGCUG---UG-CUCCu -5'
24583 3' -56.5 NC_005264.1 + 133118 0.67 0.874235
Target:  5'- aGCACCUGCUgccgaucgUCUCUaaGCGCG-GGAg -3'
miRNA:   3'- -UGUGGGCGGa-------AGAGAgcUGUGCuCCU- -5'
24583 3' -56.5 NC_005264.1 + 144873 0.67 0.859484
Target:  5'- cGCGCUCGCCaUCggaCUCGugGuCgGAGGAa -3'
miRNA:   3'- -UGUGGGCGGaAGa--GAGCugU-G-CUCCU- -5'
24583 3' -56.5 NC_005264.1 + 34313 0.67 0.850246
Target:  5'- gGCGCCgCGCCUgacgcuggcugaCUCgcuGACGCGAGGu -3'
miRNA:   3'- -UGUGG-GCGGAa-----------GAGag-CUGUGCUCCu -5'
24583 3' -56.5 NC_005264.1 + 153340 0.67 0.850246
Target:  5'- gGCGCCgCGCCUgacgcuggcugaCUCgcuGACGCGAGGu -3'
miRNA:   3'- -UGUGG-GCGGAa-----------GAGag-CUGUGCUCCu -5'
24583 3' -56.5 NC_005264.1 + 87356 0.67 0.847105
Target:  5'- cACGCCCGCUuucccuguggccgugUUCUCUaaGCACGuccuGGAa -3'
miRNA:   3'- -UGUGGGCGG---------------AAGAGAgcUGUGCu---CCU- -5'
24583 3' -56.5 NC_005264.1 + 136708 0.68 0.835056
Target:  5'- -gGCUCGCCaUUCUCUCGGCccgcgccACGAGc- -3'
miRNA:   3'- ugUGGGCGG-AAGAGAGCUG-------UGCUCcu -5'
24583 3' -56.5 NC_005264.1 + 22613 0.68 0.819215
Target:  5'- cACGCCuCGCCgccaagUCUUGGCcCGAGGGa -3'
miRNA:   3'- -UGUGG-GCGGaag---AGAGCUGuGCUCCU- -5'
24583 3' -56.5 NC_005264.1 + 117968 0.69 0.772038
Target:  5'- -gGCCCGCCUccccaggcugcagaUCUCUCGACGgcaccCGGacGGAc -3'
miRNA:   3'- ugUGGGCGGA--------------AGAGAGCUGU-----GCU--CCU- -5'
24583 3' -56.5 NC_005264.1 + 75690 0.7 0.736999
Target:  5'- cGCGCagCGCCgUCUUUCGGCGCGAaGAc -3'
miRNA:   3'- -UGUGg-GCGGaAGAGAGCUGUGCUcCU- -5'
24583 3' -56.5 NC_005264.1 + 142951 0.7 0.731191
Target:  5'- aGCACCCgaaauggcuagcgcgGCCgcggcggUCUCUCGgGCAUGAGGc -3'
miRNA:   3'- -UGUGGG---------------CGGa------AGAGAGC-UGUGCUCCu -5'
24583 3' -56.5 NC_005264.1 + 18425 0.7 0.717523
Target:  5'- -gGCgCGCCcUCUCgcUCGGCGCGGGGu -3'
miRNA:   3'- ugUGgGCGGaAGAG--AGCUGUGCUCCu -5'
24583 3' -56.5 NC_005264.1 + 73330 0.7 0.717523
Target:  5'- cCGCCUGCCg-CUCUCuGCACGAuGGGu -3'
miRNA:   3'- uGUGGGCGGaaGAGAGcUGUGCU-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.