miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24583 5' -52.6 NC_005264.1 + 93842 0.66 0.982255
Target:  5'- gGUUGGCCGUGCgCGcAAuaaugcGGCGGGu -3'
miRNA:   3'- -CAACCGGCGCGaGCuUUuuc---UCGCUC- -5'
24583 5' -52.6 NC_005264.1 + 59743 0.66 0.982255
Target:  5'- aUUGGCUGC-CUCGAAcuucucGGGGGGCa-- -3'
miRNA:   3'- cAACCGGCGcGAGCUU------UUUCUCGcuc -5'
24583 5' -52.6 NC_005264.1 + 148158 0.66 0.982255
Target:  5'- --cGGuuGUGUuaucgcugcacuUUGGGAGGGAGCGGGu -3'
miRNA:   3'- caaCCggCGCG------------AGCUUUUUCUCGCUC- -5'
24583 5' -52.6 NC_005264.1 + 45341 0.66 0.980125
Target:  5'- --cGcGCCGCGCcCGAGAcGAG-GCGAa -3'
miRNA:   3'- caaC-CGGCGCGaGCUUU-UUCuCGCUc -5'
24583 5' -52.6 NC_005264.1 + 46585 0.66 0.977811
Target:  5'- ---aGUCGCGCgugCGGAGGcucugucccugcGGGGCGAGg -3'
miRNA:   3'- caacCGGCGCGa--GCUUUU------------UCUCGCUC- -5'
24583 5' -52.6 NC_005264.1 + 116442 0.66 0.977811
Target:  5'- -cUGGCCGCGggggCGAcGAucGGGGCGGu -3'
miRNA:   3'- caACCGGCGCga--GCUuUU--UCUCGCUc -5'
24583 5' -52.6 NC_005264.1 + 147783 0.66 0.977811
Target:  5'- -gUGGaCCGCGCgaacugcgCGAcgGAG-GUGAGg -3'
miRNA:   3'- caACC-GGCGCGa-------GCUuuUUCuCGCUC- -5'
24583 5' -52.6 NC_005264.1 + 24647 0.66 0.977811
Target:  5'- uUUGGCCGC-CUUGucucuGcAGCGAGg -3'
miRNA:   3'- cAACCGGCGcGAGCuuuuuC-UCGCUC- -5'
24583 5' -52.6 NC_005264.1 + 53105 0.66 0.977811
Target:  5'- -gUGGaCaagGCGCUCGGcGAGGGGGcCGAGg -3'
miRNA:   3'- caACC-Gg--CGCGAGCU-UUUUCUC-GCUC- -5'
24583 5' -52.6 NC_005264.1 + 103823 0.66 0.977811
Target:  5'- --gGGCuUGCGCUCGAuucgcuGAGCGc- -3'
miRNA:   3'- caaCCG-GCGCGAGCUuuuu--CUCGCuc -5'
24583 5' -52.6 NC_005264.1 + 90833 0.66 0.977811
Target:  5'- --cGGCCGCGCacgUCGAGcAAGAaacagcucGCGuAGg -3'
miRNA:   3'- caaCCGGCGCG---AGCUUuUUCU--------CGC-UC- -5'
24583 5' -52.6 NC_005264.1 + 106437 0.66 0.975305
Target:  5'- --gGcGCCGCGCUCGAuau---GCGAu -3'
miRNA:   3'- caaC-CGGCGCGAGCUuuuucuCGCUc -5'
24583 5' -52.6 NC_005264.1 + 44278 0.66 0.975305
Target:  5'- ---cGCCGCGCggaUGAGAucaccGAGCGGGa -3'
miRNA:   3'- caacCGGCGCGa--GCUUUuu---CUCGCUC- -5'
24583 5' -52.6 NC_005264.1 + 102236 0.66 0.975305
Target:  5'- --cGGCUGcCGCggcauaCGAGAAGGGGCucGAGa -3'
miRNA:   3'- caaCCGGC-GCGa-----GCUUUUUCUCG--CUC- -5'
24583 5' -52.6 NC_005264.1 + 155301 0.66 0.972597
Target:  5'- --aGGCCGUcCUCGugcguaggcgaGGAGAGGGCGGa -3'
miRNA:   3'- caaCCGGCGcGAGC-----------UUUUUCUCGCUc -5'
24583 5' -52.6 NC_005264.1 + 123485 0.66 0.972597
Target:  5'- -cUGGCUGCGCgauucugggCGGGAAacAGucgcGCGAGg -3'
miRNA:   3'- caACCGGCGCGa--------GCUUUU--UCu---CGCUC- -5'
24583 5' -52.6 NC_005264.1 + 36274 0.66 0.972597
Target:  5'- --aGGCCGUcCUCGugcguaggcgaGGAGAGGGCGGa -3'
miRNA:   3'- caaCCGGCGcGAGC-----------UUUUUCUCGCUc -5'
24583 5' -52.6 NC_005264.1 + 4458 0.66 0.972597
Target:  5'- -cUGGCUGCGCgauucugggCGGGAAacAGucgcGCGAGg -3'
miRNA:   3'- caACCGGCGCGa--------GCUUUU--UCu---CGCUC- -5'
24583 5' -52.6 NC_005264.1 + 3965 0.66 0.971745
Target:  5'- -cUGGCCGCGC-CGGccggcuuuaccgccAGcAGGGCGGc -3'
miRNA:   3'- caACCGGCGCGaGCU--------------UUuUCUCGCUc -5'
24583 5' -52.6 NC_005264.1 + 153894 0.67 0.969682
Target:  5'- aGUUGGCCG-GCcCGAAGgccGAGAaacuguuccGCGAGu -3'
miRNA:   3'- -CAACCGGCgCGaGCUUU---UUCU---------CGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.