miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 37624 0.66 0.780602
Target:  5'- cGUCucgcacGGCcauGGCGAcCGGCGUGCC-CCa -3'
miRNA:   3'- -CAGu-----CCGcu-UCGCU-GUCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 60838 0.66 0.780602
Target:  5'- uUCAgcuuGGCGucGGCGuCGGCGCGUgCGCg -3'
miRNA:   3'- cAGU----CCGCu-UCGCuGUCGCGCG-GCGg -5'
24584 3' -60 NC_005264.1 + 121860 0.66 0.780602
Target:  5'- ---uGGCGGAGgGcCGGuCGCGCucgCGCCg -3'
miRNA:   3'- caguCCGCUUCgCuGUC-GCGCG---GCGG- -5'
24584 3' -60 NC_005264.1 + 160890 0.66 0.780602
Target:  5'- cUCGGGgGggGgGGCAaCG-GCCGCg -3'
miRNA:   3'- cAGUCCgCuuCgCUGUcGCgCGGCGg -5'
24584 3' -60 NC_005264.1 + 52680 0.66 0.780602
Target:  5'- -aUAGGCcccaAAGCcGCGGCGgguuuCGCCGCCc -3'
miRNA:   3'- caGUCCGc---UUCGcUGUCGC-----GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 162635 0.66 0.780602
Target:  5'- aUCGGGggcuacgauuuCGAGGCucggaAGCGCGCCGgCg -3'
miRNA:   3'- cAGUCC-----------GCUUCGcug--UCGCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 156651 0.66 0.780602
Target:  5'- cGUCucgcacGGCcauGGCGAcCGGCGUGCC-CCa -3'
miRNA:   3'- -CAGu-----CCGcu-UCGCU-GUCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 2834 0.66 0.780602
Target:  5'- ---uGGCGGAGgGcCGGuCGCGCucgCGCCg -3'
miRNA:   3'- caguCCGCUUCgCuGUC-GCGCG---GCGG- -5'
24584 3' -60 NC_005264.1 + 41864 0.66 0.780602
Target:  5'- cUCGGGgGggGgGGCAaCG-GCCGCg -3'
miRNA:   3'- cAGUCCgCuuCgCUGUcGCgCGGCGg -5'
24584 3' -60 NC_005264.1 + 101591 0.66 0.780602
Target:  5'- --gAGGCGcgccguGAGCuGgAGCGCGCCaucGCCa -3'
miRNA:   3'- cagUCCGC------UUCGcUgUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 75419 0.66 0.780602
Target:  5'- -gCGGGC--AGUGuACGGCGgGCCGUg -3'
miRNA:   3'- caGUCCGcuUCGC-UGUCGCgCGGCGg -5'
24584 3' -60 NC_005264.1 + 43608 0.66 0.780602
Target:  5'- aUCGGGggcuacgauuuCGAGGCucggaAGCGCGCCGgCg -3'
miRNA:   3'- cAGUCC-----------GCUUCGcug--UCGCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 76501 0.66 0.780602
Target:  5'- uGUCGGGgGGaauaGGCGACcGUcuacCGCCGCUu -3'
miRNA:   3'- -CAGUCCgCU----UCGCUGuCGc---GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 75930 0.66 0.780602
Target:  5'- aGUUAGGauCGGacAGCGuggucucuaucGCGGC-CGCCGCCu -3'
miRNA:   3'- -CAGUCC--GCU--UCGC-----------UGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 56596 0.66 0.780602
Target:  5'- -gCAGGCGcGAGCG-CcuCGCGaCCGCUc -3'
miRNA:   3'- caGUCCGC-UUCGCuGucGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 127386 0.66 0.778802
Target:  5'- cGUCAGGCGAugguuacgugguGCGGCAG-GCaGCCcaaGCa -3'
miRNA:   3'- -CAGUCCGCUu-----------CGCUGUCgCG-CGG---CGg -5'
24584 3' -60 NC_005264.1 + 36821 0.66 0.771557
Target:  5'- -gCAGGCGAGGCG-CGGCGaagaUCGUa -3'
miRNA:   3'- caGUCCGCUUCGCuGUCGCgc--GGCGg -5'
24584 3' -60 NC_005264.1 + 28015 0.66 0.771557
Target:  5'- -cCAGGUcggucgGggGCGGgaggucuucCGGCGCGCgcgaCGCCg -3'
miRNA:   3'- caGUCCG------CuuCGCU---------GUCGCGCG----GCGG- -5'
24584 3' -60 NC_005264.1 + 129574 0.66 0.771557
Target:  5'- cUCAGG-GgcGCGGaucGCGCGuUCGCCg -3'
miRNA:   3'- cAGUCCgCuuCGCUgu-CGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 10547 0.66 0.771557
Target:  5'- cUCAGG-GgcGCGGaucGCGCGuUCGCCg -3'
miRNA:   3'- cAGUCCgCuuCGCUgu-CGCGC-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.