miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 156651 0.66 0.780602
Target:  5'- cGUCucgcacGGCcauGGCGAcCGGCGUGCC-CCa -3'
miRNA:   3'- -CAGu-----CCGcu-UCGCU-GUCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 130539 0.66 0.762396
Target:  5'- -cCuGcGCGAAGCGucGCGGCGCGUgUGCUa -3'
miRNA:   3'- caGuC-CGCUUCGC--UGUCGCGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 39943 0.66 0.762396
Target:  5'- -cCGGGUGggGCcACGGCGaccucgGCUGCg -3'
miRNA:   3'- caGUCCGCuuCGcUGUCGCg-----CGGCGg -5'
24584 3' -60 NC_005264.1 + 83121 0.66 0.762396
Target:  5'- -aCGGGCGccaaggccGCGGaGGCGCGuCUGCCc -3'
miRNA:   3'- caGUCCGCuu------CGCUgUCGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 74612 0.66 0.762396
Target:  5'- gGUCugcGuaGAAGCGAUcuuGGCGCGCUaCCg -3'
miRNA:   3'- -CAGu--CcgCUUCGCUG---UCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 71616 0.66 0.762396
Target:  5'- cUCAccGGCGAGGCGGCGGCagaGauaGCCc -3'
miRNA:   3'- cAGU--CCGCUUCGCUGUCGcg-Cgg-CGG- -5'
24584 3' -60 NC_005264.1 + 34116 0.66 0.762396
Target:  5'- -gCGGcGCGAaacAGCGucgaGGCGCGagcCCGCCu -3'
miRNA:   3'- caGUC-CGCU---UCGCug--UCGCGC---GGCGG- -5'
24584 3' -60 NC_005264.1 + 26798 0.66 0.762396
Target:  5'- -gCGGGCuuccacGAGGagaaGugGGcCGCGCCGCUc -3'
miRNA:   3'- caGUCCG------CUUCg---CugUC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 84192 0.66 0.762396
Target:  5'- --uGGGaCGAGGC-ACAGgGcCGCCGCg -3'
miRNA:   3'- cagUCC-GCUUCGcUGUCgC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 133378 0.66 0.770646
Target:  5'- cUC-GGCGAGagucaucGCGGCGGCGCaGCCcguuggugGCCc -3'
miRNA:   3'- cAGuCCGCUU-------CGCUGUCGCG-CGG--------CGG- -5'
24584 3' -60 NC_005264.1 + 10547 0.66 0.771557
Target:  5'- cUCAGG-GgcGCGGaucGCGCGuUCGCCg -3'
miRNA:   3'- cAGUCCgCuuCGCUgu-CGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 127386 0.66 0.778802
Target:  5'- cGUCAGGCGAugguuacgugguGCGGCAG-GCaGCCcaaGCa -3'
miRNA:   3'- -CAGUCCGCUu-----------CGCUGUCgCG-CGG---CGg -5'
24584 3' -60 NC_005264.1 + 101591 0.66 0.780602
Target:  5'- --gAGGCGcgccguGAGCuGgAGCGCGCCaucGCCa -3'
miRNA:   3'- cagUCCGC------UUCGcUgUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 75419 0.66 0.780602
Target:  5'- -gCGGGC--AGUGuACGGCGgGCCGUg -3'
miRNA:   3'- caGUCCGcuUCGC-UGUCGCgCGGCGg -5'
24584 3' -60 NC_005264.1 + 43608 0.66 0.780602
Target:  5'- aUCGGGggcuacgauuuCGAGGCucggaAGCGCGCCGgCg -3'
miRNA:   3'- cAGUCC-----------GCUUCGcug--UCGCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 76501 0.66 0.780602
Target:  5'- uGUCGGGgGGaauaGGCGACcGUcuacCGCCGCUu -3'
miRNA:   3'- -CAGUCCgCU----UCGCUGuCGc---GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 75930 0.66 0.780602
Target:  5'- aGUUAGGauCGGacAGCGuggucucuaucGCGGC-CGCCGCCu -3'
miRNA:   3'- -CAGUCC--GCU--UCGC-----------UGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 56596 0.66 0.780602
Target:  5'- -gCAGGCGcGAGCG-CcuCGCGaCCGCUc -3'
miRNA:   3'- caGUCCGC-UUCGCuGucGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 41864 0.66 0.780602
Target:  5'- cUCGGGgGggGgGGCAaCG-GCCGCg -3'
miRNA:   3'- cAGUCCgCuuCgCUGUcGCgCGGCGg -5'
24584 3' -60 NC_005264.1 + 2834 0.66 0.780602
Target:  5'- ---uGGCGGAGgGcCGGuCGCGCucgCGCCg -3'
miRNA:   3'- caguCCGCUUCgCuGUC-GCGCG---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.