miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 75930 0.66 0.780602
Target:  5'- aGUUAGGauCGGacAGCGuggucucuaucGCGGC-CGCCGCCu -3'
miRNA:   3'- -CAGUCC--GCU--UCGC-----------UGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 76501 0.66 0.780602
Target:  5'- uGUCGGGgGGaauaGGCGACcGUcuacCGCCGCUu -3'
miRNA:   3'- -CAGUCCgCU----UCGCUGuCGc---GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 43608 0.66 0.780602
Target:  5'- aUCGGGggcuacgauuuCGAGGCucggaAGCGCGCCGgCg -3'
miRNA:   3'- cAGUCC-----------GCUUCGcug--UCGCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 75419 0.66 0.780602
Target:  5'- -gCGGGC--AGUGuACGGCGgGCCGUg -3'
miRNA:   3'- caGUCCGcuUCGC-UGUCGCgCGGCGg -5'
24584 3' -60 NC_005264.1 + 101591 0.66 0.780602
Target:  5'- --gAGGCGcgccguGAGCuGgAGCGCGCCaucGCCa -3'
miRNA:   3'- cagUCCGC------UUCGcUgUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 83121 0.66 0.762396
Target:  5'- -aCGGGCGccaaggccGCGGaGGCGCGuCUGCCc -3'
miRNA:   3'- caGUCCGCuu------CGCUgUCGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 74612 0.66 0.762396
Target:  5'- gGUCugcGuaGAAGCGAUcuuGGCGCGCUaCCg -3'
miRNA:   3'- -CAGu--CcgCUUCGCUG---UCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 104817 0.66 0.743755
Target:  5'- -gCGGGCGccGCacGACGGCcUGuCCGCCg -3'
miRNA:   3'- caGUCCGCuuCG--CUGUCGcGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 45834 0.66 0.747515
Target:  5'- cGUCAuGCGccGCgcagaccgcccccaaGACuucgagucuGCGCGCCGCCa -3'
miRNA:   3'- -CAGUcCGCuuCG---------------CUGu--------CGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 95469 0.66 0.752193
Target:  5'- -gCGGGCGcAGCGA--GCGCGggcgcuacguuuuCCGCCc -3'
miRNA:   3'- caGUCCGCuUCGCUguCGCGC-------------GGCGG- -5'
24584 3' -60 NC_005264.1 + 27948 0.66 0.753126
Target:  5'- -aCGGGCGccGCGucuuccaaacaACGGUGCG-CGCCc -3'
miRNA:   3'- caGUCCGCuuCGC-----------UGUCGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 138421 0.66 0.753126
Target:  5'- -cCGGGCG-GGCGuguuUAaCGCGCCGCg -3'
miRNA:   3'- caGUCCGCuUCGCu---GUcGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 103123 0.66 0.753126
Target:  5'- cGUCcGGCGcgguagccgccGGCG-CGGCGCGCgGCg -3'
miRNA:   3'- -CAGuCCGCu----------UCGCuGUCGCGCGgCGg -5'
24584 3' -60 NC_005264.1 + 83164 0.66 0.756846
Target:  5'- uGUCGcGGgGAuggggagaauuugucAGCGGCAgGCGCGgCGCg -3'
miRNA:   3'- -CAGU-CCgCU---------------UCGCUGU-CGCGCgGCGg -5'
24584 3' -60 NC_005264.1 + 122032 0.66 0.761473
Target:  5'- aGUCucGGCGAccccGCGGCaAGCggcuccgcucucgGCGCCGCg -3'
miRNA:   3'- -CAGu-CCGCUu---CGCUG-UCG-------------CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 154569 0.66 0.761473
Target:  5'- ---cGGCcugcaacGAGGCGGacacCAGgGCGCCGCUg -3'
miRNA:   3'- caguCCG-------CUUCGCU----GUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 84192 0.66 0.762396
Target:  5'- --uGGGaCGAGGC-ACAGgGcCGCCGCg -3'
miRNA:   3'- cagUCC-GCUUCGcUGUCgC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 26798 0.66 0.762396
Target:  5'- -gCGGGCuuccacGAGGagaaGugGGcCGCGCCGCUc -3'
miRNA:   3'- caGUCCG------CUUCg---CugUC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 34116 0.66 0.762396
Target:  5'- -gCGGcGCGAaacAGCGucgaGGCGCGagcCCGCCu -3'
miRNA:   3'- caGUC-CGCU---UCGCug--UCGCGC---GGCGG- -5'
24584 3' -60 NC_005264.1 + 71616 0.66 0.762396
Target:  5'- cUCAccGGCGAGGCGGCGGCagaGauaGCCc -3'
miRNA:   3'- cAGU--CCGCUUCGCUGUCGcg-Cgg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.