miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 122032 0.66 0.761473
Target:  5'- aGUCucGGCGAccccGCGGCaAGCggcuccgcucucgGCGCCGCg -3'
miRNA:   3'- -CAGu-CCGCUu---CGCUG-UCG-------------CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 154569 0.66 0.761473
Target:  5'- ---cGGCcugcaacGAGGCGGacacCAGgGCGCCGCUg -3'
miRNA:   3'- caguCCG-------CUUCGCU----GUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 36191 0.66 0.743755
Target:  5'- gGUUGGGCGAaagAGCaGACcgcauGCGCGCagaccagaGCCc -3'
miRNA:   3'- -CAGUCCGCU---UCG-CUGu----CGCGCGg-------CGG- -5'
24584 3' -60 NC_005264.1 + 83223 0.66 0.743755
Target:  5'- --uGGGcCGuugcGCGugGGCGUcuagGCCGCCg -3'
miRNA:   3'- cagUCC-GCuu--CGCugUCGCG----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 84192 0.66 0.762396
Target:  5'- --uGGGaCGAGGC-ACAGgGcCGCCGCg -3'
miRNA:   3'- cagUCC-GCUUCGcUGUCgC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 38363 0.66 0.740926
Target:  5'- --gGGGCGGuuaggaccuccuccGGCGAgAGCGgCGaCGCCg -3'
miRNA:   3'- cagUCCGCU--------------UCGCUgUCGC-GCgGCGG- -5'
24584 3' -60 NC_005264.1 + 26798 0.66 0.762396
Target:  5'- -gCGGGCuuccacGAGGagaaGugGGcCGCGCCGCUc -3'
miRNA:   3'- caGUCCG------CUUCg---CugUC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 128083 0.66 0.734293
Target:  5'- uUCGuguaGCGAcagcGGCGAcCGGCGCGCCGg- -3'
miRNA:   3'- cAGUc---CGCU----UCGCU-GUCGCGCGGCgg -5'
24584 3' -60 NC_005264.1 + 123030 0.66 0.734293
Target:  5'- -cUAGGCGGAuGCGuGCcGCGCaUCGCCa -3'
miRNA:   3'- caGUCCGCUU-CGC-UGuCGCGcGGCGG- -5'
24584 3' -60 NC_005264.1 + 121543 0.66 0.734293
Target:  5'- -gCGGGCcgauagcgugGAAGuCGACgcgGGCGgGCCGCUu -3'
miRNA:   3'- caGUCCG----------CUUC-GCUG---UCGCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 45834 0.66 0.747515
Target:  5'- cGUCAuGCGccGCgcagaccgcccccaaGACuucgagucuGCGCGCCGCCa -3'
miRNA:   3'- -CAGUcCGCuuCG---------------CUGu--------CGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 95357 0.67 0.695692
Target:  5'- cUC-GGCGggGCGGCGGC-C-CgGCCu -3'
miRNA:   3'- cAGuCCGCuuCGCUGUCGcGcGgCGG- -5'
24584 3' -60 NC_005264.1 + 47934 0.67 0.705438
Target:  5'- -gCAGGCGGaggacGGCGAgacccggucCAGCGUGcCCGUg -3'
miRNA:   3'- caGUCCGCU-----UCGCU---------GUCGCGC-GGCGg -5'
24584 3' -60 NC_005264.1 + 4333 0.67 0.705438
Target:  5'- -gCAGGCcugccccuGGCGGCugagcGCGCGUCGCa -3'
miRNA:   3'- caGUCCGcu------UCGCUGu----CGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 12038 0.67 0.68982
Target:  5'- cUUAGGCGAAGCGcccgcgaaccauccCGGUGCGa-GCCa -3'
miRNA:   3'- cAGUCCGCUUCGCu-------------GUCGCGCggCGG- -5'
24584 3' -60 NC_005264.1 + 18463 0.67 0.692759
Target:  5'- cGUCGGGCcuagguaagugaucGAGGUGcACAGUGacguagauguCGCCGCUg -3'
miRNA:   3'- -CAGUCCG--------------CUUCGC-UGUCGC----------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 83709 0.67 0.695692
Target:  5'- -cCAcGGaGAAGgGGCaAGCGCacGCCGCCg -3'
miRNA:   3'- caGU-CCgCUUCgCUG-UCGCG--CGGCGG- -5'
24584 3' -60 NC_005264.1 + 139101 0.67 0.695692
Target:  5'- cGUCGcGGCugcugcuGAGCGGCGGCGUG-UGCCc -3'
miRNA:   3'- -CAGU-CCGc------UUCGCUGUCGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 75705 0.67 0.704466
Target:  5'- uUCAGuaccGCGAcgaucucGGCGuACAGCGCGUgGCa -3'
miRNA:   3'- cAGUC----CGCU-------UCGC-UGUCGCGCGgCGg -5'
24584 3' -60 NC_005264.1 + 7993 0.67 0.705438
Target:  5'- -aCGGGCcgccauugcGggGcCGGCAGagGCGCcCGCCa -3'
miRNA:   3'- caGUCCG---------CuuC-GCUGUCg-CGCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.