miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 37549 1.12 0.000858
Target:  5'- cGUCAGGCGAAGCGACAGCGCGCCGCCg -3'
miRNA:   3'- -CAGUCCGCUUCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 20138 0.88 0.03993
Target:  5'- -gCGGGC-AGGCGAUGGCGCGCCGCCg -3'
miRNA:   3'- caGUCCGcUUCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 37788 0.83 0.092134
Target:  5'- cUCgAGGCGAgcGGCGGagaagaGGCGCGCCGCCg -3'
miRNA:   3'- cAG-UCCGCU--UCGCUg-----UCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 30837 0.81 0.120132
Target:  5'- -aCGGGCucgcgucgucgucGGCGGCGGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGcu-----------UCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 149863 0.81 0.120132
Target:  5'- -aCGGGCucgcgucgucgucGGCGGCGGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGcu-----------UCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 157013 0.79 0.152819
Target:  5'- -cCAGGCG-AGUGGCGGCcacCGCCGCCg -3'
miRNA:   3'- caGUCCGCuUCGCUGUCGc--GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 37986 0.79 0.152819
Target:  5'- -cCAGGCG-AGUGGCGGCcacCGCCGCCg -3'
miRNA:   3'- caGUCCGCuUCGCUGUCGc--GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 106515 0.78 0.177163
Target:  5'- --gAGGCGGugcgcgacGGCGGCAGCGCGgCCGCg -3'
miRNA:   3'- cagUCCGCU--------UCGCUGUCGCGC-GGCGg -5'
24584 3' -60 NC_005264.1 + 103723 0.77 0.225408
Target:  5'- -gCGGcGCGGcaucAGCGGCGGCG-GCCGCCa -3'
miRNA:   3'- caGUC-CGCU----UCGCUGUCGCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 95353 0.76 0.241918
Target:  5'- aUgGGGcCGAcgGGCGGC-GCGUGCCGCCa -3'
miRNA:   3'- cAgUCC-GCU--UCGCUGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 159401 0.75 0.271034
Target:  5'- -aCGGGCGGcggaccccugagaAGUGG-GGCGCGCCGCCu -3'
miRNA:   3'- caGUCCGCU-------------UCGCUgUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 31604 0.75 0.271656
Target:  5'- cUCuGGCGAGGCGGC-GCGCaUCGCCc -3'
miRNA:   3'- cAGuCCGCUUCGCUGuCGCGcGGCGG- -5'
24584 3' -60 NC_005264.1 + 150631 0.75 0.271656
Target:  5'- cUCuGGCGAGGCGGC-GCGCaUCGCCc -3'
miRNA:   3'- cAGuCCGCUUCGCUGuCGCGcGGCGG- -5'
24584 3' -60 NC_005264.1 + 103076 0.75 0.271656
Target:  5'- aGUCccGCGAAGCGuccgcgucGCAGC-CGCCGCCc -3'
miRNA:   3'- -CAGucCGCUUCGC--------UGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 31782 0.75 0.297509
Target:  5'- -gCGGGCGcuucgccuaaGGGCGGCGGU-CGCCGCCg -3'
miRNA:   3'- caGUCCGC----------UUCGCUGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 150808 0.75 0.297509
Target:  5'- -gCGGGCGcuucgccuaaGGGCGGCGGU-CGCCGCCg -3'
miRNA:   3'- caGUCCGC----------UUCGCUGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 110862 0.74 0.318124
Target:  5'- cUC-GGCGAagaucgAGCGugAGCGCGCCGaCa -3'
miRNA:   3'- cAGuCCGCU------UCGCugUCGCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 137 0.74 0.331726
Target:  5'- ---cGGCGGccgccuuaacgccGGCGcGCAGCGCGCCGaCCg -3'
miRNA:   3'- caguCCGCU-------------UCGC-UGUCGCGCGGC-GG- -5'
24584 3' -60 NC_005264.1 + 119164 0.74 0.331726
Target:  5'- ---cGGCGGccgccuuaacgccGGCGcGCAGCGCGCCGaCCg -3'
miRNA:   3'- caguCCGCU-------------UCGC-UGUCGCGCGGC-GG- -5'
24584 3' -60 NC_005264.1 + 18049 0.74 0.339794
Target:  5'- ----cGCGAAGCGGCGGCGCcGCgaGCCa -3'
miRNA:   3'- cagucCGCUUCGCUGUCGCG-CGg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.