miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 22753 0.73 0.350267
Target:  5'- --uGGGCGAAGCGAUAGCggcgggcaaugagggGCGCgGCg -3'
miRNA:   3'- cagUCCGCUUCGCUGUCG---------------CGCGgCGg -5'
24584 3' -60 NC_005264.1 + 45321 0.73 0.354825
Target:  5'- aUUAGG-GGAGCGaccGCAGaCGCGCCGCg -3'
miRNA:   3'- cAGUCCgCUUCGC---UGUC-GCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 117421 0.73 0.362515
Target:  5'- aUCGGGgcuguCGcGGCGcGCAGgGCGCCGCCc -3'
miRNA:   3'- cAGUCC-----GCuUCGC-UGUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 46883 0.73 0.370319
Target:  5'- uGUCGGGCGccGCGuaccuccUAGCuGCGCCGCg -3'
miRNA:   3'- -CAGUCCGCuuCGCu------GUCG-CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 67513 0.73 0.370319
Target:  5'- uUCGcGGCGcccGGCGGCGGCaaucuccauGCGCUGCCg -3'
miRNA:   3'- cAGU-CCGCu--UCGCUGUCG---------CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 32373 0.73 0.370319
Target:  5'- uUCuGGCGAGGaugcCGGCGGCcgGCGuCCGCCg -3'
miRNA:   3'- cAGuCCGCUUC----GCUGUCG--CGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 151400 0.73 0.370319
Target:  5'- uUCuGGCGAGGaugcCGGCGGCcgGCGuCCGCCg -3'
miRNA:   3'- cAGuCCGCUUC----GCUGUCG--CGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 43896 0.73 0.370319
Target:  5'- --gGGGCGccgGAGaCGAUAGCGCGgCCGUCg -3'
miRNA:   3'- cagUCCGC---UUC-GCUGUCGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 9868 0.73 0.378238
Target:  5'- aUCGGGCGcGGUccCGGCGCGCCacgGCCu -3'
miRNA:   3'- cAGUCCGCuUCGcuGUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 128894 0.73 0.378238
Target:  5'- aUCGGGCGcGGUccCGGCGCGCCacgGCCu -3'
miRNA:   3'- cAGUCCGCuUCGcuGUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 2906 0.73 0.386269
Target:  5'- --aGGGCGAcGGCGAgAGCGacggaGUCGCCg -3'
miRNA:   3'- cagUCCGCU-UCGCUgUCGCg----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 142693 0.73 0.386269
Target:  5'- cUUGGGCGc--CGGCGGCGCGCCacGCCu -3'
miRNA:   3'- cAGUCCGCuucGCUGUCGCGCGG--CGG- -5'
24584 3' -60 NC_005264.1 + 121932 0.73 0.386269
Target:  5'- --aGGGCGAcGGCGAgAGCGacggaGUCGCCg -3'
miRNA:   3'- cagUCCGCU-UCGCUgUCGCg----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 154806 0.72 0.394413
Target:  5'- --gAGGCGGAGgGcGCGGUgGCGCCGUCg -3'
miRNA:   3'- cagUCCGCUUCgC-UGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 35780 0.72 0.394413
Target:  5'- --gAGGCGGAGgGcGCGGUgGCGCCGUCg -3'
miRNA:   3'- cagUCCGCUUCgC-UGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 104717 0.72 0.402666
Target:  5'- -aCGGcugcGCGAGGuCGcGCAGCaGCGCCGCCu -3'
miRNA:   3'- caGUC----CGCUUC-GC-UGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 95650 0.72 0.411028
Target:  5'- -aUAGGCGccGCGucAUAGCGCugcagGCCGCCa -3'
miRNA:   3'- caGUCCGCuuCGC--UGUCGCG-----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 156838 0.72 0.411028
Target:  5'- uUCAGGUGcgcacAGCGACcGcCGCGCUGCUa -3'
miRNA:   3'- cAGUCCGCu----UCGCUGuC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 150121 0.72 0.411028
Target:  5'- aGUUGGGCGGAGCaugucaGAgGGCccGCGCaCGCCa -3'
miRNA:   3'- -CAGUCCGCUUCG------CUgUCG--CGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 129524 0.72 0.418645
Target:  5'- --gAGGCGAcggaaccacugcgGGCGugGGCuuagGCGUCGCCg -3'
miRNA:   3'- cagUCCGCU-------------UCGCugUCG----CGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.