miRNA display CGI


Results 41 - 60 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 75088 0.72 0.419497
Target:  5'- uUCGcGGCGcuGCGGCAG-GCGCCGgCg -3'
miRNA:   3'- cAGU-CCGCuuCGCUGUCgCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 125260 0.72 0.427209
Target:  5'- cUCGGcGCGAcuuGuucuucgcccuccGCGGCGGCGCGCUGUCg -3'
miRNA:   3'- cAGUC-CGCU---U-------------CGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 120723 0.72 0.428071
Target:  5'- gGUCGGGCGGAG-GACGGUGC-CgGCg -3'
miRNA:   3'- -CAGUCCGCUUCgCUGUCGCGcGgCGg -5'
24584 3' -60 NC_005264.1 + 48460 0.72 0.428071
Target:  5'- aGUCuguGGCGAAGCgGACAucaguagccccGCGCGuuGCg -3'
miRNA:   3'- -CAGu--CCGCUUCG-CUGU-----------CGCGCggCGg -5'
24584 3' -60 NC_005264.1 + 108670 0.72 0.436748
Target:  5'- --gAGGCGAGGuUGGCGGUGUG-CGCCa -3'
miRNA:   3'- cagUCCGCUUC-GCUGUCGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 52771 0.71 0.454399
Target:  5'- uGUUAGGCugccuGGAGCGAUGcuuuCGCGCCGCUc -3'
miRNA:   3'- -CAGUCCG-----CUUCGCUGUc---GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 45391 0.71 0.460668
Target:  5'- --aAGGCGcggcaaacgauggaGGGCGGCGcccuGCGCGCCGCg -3'
miRNA:   3'- cagUCCGC--------------UUCGCUGU----CGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 94567 0.71 0.463369
Target:  5'- --gGGGacgcaaaGAGGCGGCAGCaGCagGCCGCCc -3'
miRNA:   3'- cagUCCg------CUUCGCUGUCG-CG--CGGCGG- -5'
24584 3' -60 NC_005264.1 + 98550 0.71 0.463369
Target:  5'- --gAGGCauGGAcGCGaACAGUGCGCCGCa -3'
miRNA:   3'- cagUCCG--CUU-CGC-UGUCGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 72359 0.71 0.466983
Target:  5'- uUCgAGGCGAacGGgacuuggacuuuguuUGACGGcCGCGCCGCCc -3'
miRNA:   3'- cAG-UCCGCU--UC---------------GCUGUC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 90453 0.71 0.48158
Target:  5'- cUCAGGUG-GGCGGC-GCG-GCCGUCa -3'
miRNA:   3'- cAGUCCGCuUCGCUGuCGCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 131989 0.71 0.48158
Target:  5'- -aCAGGCc-GGUGGCGGUGgGCCGaCCg -3'
miRNA:   3'- caGUCCGcuUCGCUGUCGCgCGGC-GG- -5'
24584 3' -60 NC_005264.1 + 131221 0.71 0.48158
Target:  5'- --gAGGCauggucgcaGGGCGAU-GCGCGCCGCCu -3'
miRNA:   3'- cagUCCGc--------UUCGCUGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 12194 0.71 0.48158
Target:  5'- --gAGGCauggucgcaGGGCGAU-GCGCGCCGCCu -3'
miRNA:   3'- cagUCCGc--------UUCGCUGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 155772 0.71 0.490816
Target:  5'- -gCAGcGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caGUC-CGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 76735 0.71 0.490816
Target:  5'- cGUauuGGgGAAGCGugGGUGCGaacuCGCCg -3'
miRNA:   3'- -CAgu-CCgCUUCGCugUCGCGCg---GCGG- -5'
24584 3' -60 NC_005264.1 + 36746 0.71 0.490816
Target:  5'- -gCAGcGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caGUC-CGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 67473 0.71 0.490816
Target:  5'- -cCuGGCaGuuuGGCGGCA-CGCGCCGCCc -3'
miRNA:   3'- caGuCCG-Cu--UCGCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 6464 0.7 0.500132
Target:  5'- cUC-GGCGgcGCGGCgaacgucggGGUGCGCgGCCa -3'
miRNA:   3'- cAGuCCGCuuCGCUG---------UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 105869 0.7 0.500132
Target:  5'- -gCGGGCGAcgAGgGACu-CGuCGCCGCCa -3'
miRNA:   3'- caGUCCGCU--UCgCUGucGC-GCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.