miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 125491 0.7 0.500132
Target:  5'- cUC-GGCGgcGCGGCgaacgucggGGUGCGCgGCCa -3'
miRNA:   3'- cAGuCCGCuuCGCUG---------UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 105869 0.7 0.500132
Target:  5'- -gCGGGCGAcgAGgGACu-CGuCGCCGCCa -3'
miRNA:   3'- caGUCCGCU--UCgCUGucGC-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 6464 0.7 0.500132
Target:  5'- cUC-GGCGgcGCGGCgaacgucggGGUGCGCgGCCa -3'
miRNA:   3'- cAGuCCGCuuCGCUG---------UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 37664 0.7 0.500132
Target:  5'- -gCAcGCGAugcGCGACgGGCGCGCgGCCc -3'
miRNA:   3'- caGUcCGCUu--CGCUG-UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 156690 0.7 0.500132
Target:  5'- -gCAcGCGAugcGCGACgGGCGCGCgGCCc -3'
miRNA:   3'- caGUcCGCUu--CGCUG-UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 79876 0.7 0.509526
Target:  5'- cGUCAcGGgGgcGCGGCGGCGacCGUCGCa -3'
miRNA:   3'- -CAGU-CCgCuuCGCUGUCGC--GCGGCGg -5'
24584 3' -60 NC_005264.1 + 7770 0.7 0.509526
Target:  5'- aGUCGGGCacuGAGCGAgGGgGCGCUGg- -3'
miRNA:   3'- -CAGUCCGc--UUCGCUgUCgCGCGGCgg -5'
24584 3' -60 NC_005264.1 + 126086 0.7 0.509526
Target:  5'- ---cGGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caguCCGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 126796 0.7 0.509526
Target:  5'- aGUCGGGCacuGAGCGAgGGgGCGCUGg- -3'
miRNA:   3'- -CAGUCCGc--UUCGCUgUCgCGCGGCgg -5'
24584 3' -60 NC_005264.1 + 23991 0.7 0.509526
Target:  5'- --aAGGgGAGGUGGaugaGGCGgGCCGCUg -3'
miRNA:   3'- cagUCCgCUUCGCUg---UCGCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 158844 0.7 0.509526
Target:  5'- --uGGGCGAGGaGGCA-UGUGCCGCCc -3'
miRNA:   3'- cagUCCGCUUCgCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 39818 0.7 0.509526
Target:  5'- --uGGGCGAGGaGGCA-UGUGCCGCCc -3'
miRNA:   3'- cagUCCGCUUCgCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 84152 0.7 0.509526
Target:  5'- ---cGG-GAAGUGgucGCAGCGCGCgCGCCg -3'
miRNA:   3'- caguCCgCUUCGC---UGUCGCGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 7059 0.7 0.509526
Target:  5'- ---cGGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caguCCGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 6628 0.7 0.516146
Target:  5'- -gCAGGUGAAGUuggaccugcgccccGACauauAGCcgGCGCCGCCa -3'
miRNA:   3'- caGUCCGCUUCG--------------CUG----UCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 123697 0.7 0.518993
Target:  5'- aUCAGGgaauaccugcguCGggGCGAguG-GCGCCGCg -3'
miRNA:   3'- cAGUCC------------GCuuCGCUguCgCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 4670 0.7 0.518993
Target:  5'- aUCAGGgaauaccugcguCGggGCGAguG-GCGCCGCg -3'
miRNA:   3'- cAGUCC------------GCuuCGCUguCgCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 98341 0.7 0.518993
Target:  5'- -aCAGcGCGGuccaGGCGACucucucGGCGCGCuUGCCg -3'
miRNA:   3'- caGUC-CGCU----UCGCUG------UCGCGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 158478 0.7 0.524707
Target:  5'- --gGGGCGGuggaaagcaugcuGCGACGcGCGCucaGCCGCCa -3'
miRNA:   3'- cagUCCGCUu------------CGCUGU-CGCG---CGGCGG- -5'
24584 3' -60 NC_005264.1 + 39451 0.7 0.524707
Target:  5'- --gGGGCGGuggaaagcaugcuGCGACGcGCGCucaGCCGCCa -3'
miRNA:   3'- cagUCCGCUu------------CGCUGU-CGCG---CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.