miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 33914 0.66 0.770646
Target:  5'- -aCAuGGCGGAGCGAgCccacacgaacaugAGCcCGCCGUCg -3'
miRNA:   3'- caGU-CCGCUUCGCU-G-------------UCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 133378 0.66 0.770646
Target:  5'- cUC-GGCGAGagucaucGCGGCGGCGCaGCCcguuggugGCCc -3'
miRNA:   3'- cAGuCCGCUU-------CGCUGUCGCG-CGG--------CGG- -5'
24584 3' -60 NC_005264.1 + 153143 0.66 0.762396
Target:  5'- -gCGGcGCGAaacAGCGucgaGGCGCGagcCCGCCu -3'
miRNA:   3'- caGUC-CGCU---UCGCug--UCGCGC---GGCGG- -5'
24584 3' -60 NC_005264.1 + 16014 0.66 0.762396
Target:  5'- -gCAGGCGA--CGACcGcCGCGCCuCCg -3'
miRNA:   3'- caGUCCGCUucGCUGuC-GCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 42070 0.66 0.762396
Target:  5'- -gCGGcGCGuGGCGuCAGCuGCGCCGg- -3'
miRNA:   3'- caGUC-CGCuUCGCuGUCG-CGCGGCgg -5'
24584 3' -60 NC_005264.1 + 130539 0.66 0.762396
Target:  5'- -cCuGcGCGAAGCGucGCGGCGCGUgUGCUa -3'
miRNA:   3'- caGuC-CGCUUCGC--UGUCGCGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 73817 0.66 0.762396
Target:  5'- -aCAGGCGAGugcccCGACAuGCGCgaGCUGCg -3'
miRNA:   3'- caGUCCGCUUc----GCUGU-CGCG--CGGCGg -5'
24584 3' -60 NC_005264.1 + 39943 0.66 0.762396
Target:  5'- -cCGGGUGggGCcACGGCGaccucgGCUGCg -3'
miRNA:   3'- caGUCCGCuuCGcUGUCGCg-----CGGCGg -5'
24584 3' -60 NC_005264.1 + 83121 0.66 0.762396
Target:  5'- -aCGGGCGccaaggccGCGGaGGCGCGuCUGCCc -3'
miRNA:   3'- caGUCCGCuu------CGCUgUCGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 43226 0.66 0.762396
Target:  5'- -cCA-GUGAaugcaGGCGGCA-CGUGCCGCCu -3'
miRNA:   3'- caGUcCGCU-----UCGCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 71616 0.66 0.762396
Target:  5'- cUCAccGGCGAGGCGGCGGCagaGauaGCCc -3'
miRNA:   3'- cAGU--CCGCUUCGCUGUCGcg-Cgg-CGG- -5'
24584 3' -60 NC_005264.1 + 34116 0.66 0.762396
Target:  5'- -gCGGcGCGAaacAGCGucgaGGCGCGagcCCGCCu -3'
miRNA:   3'- caGUC-CGCU---UCGCug--UCGCGC---GGCGG- -5'
24584 3' -60 NC_005264.1 + 26798 0.66 0.762396
Target:  5'- -gCGGGCuuccacGAGGagaaGugGGcCGCGCCGCUc -3'
miRNA:   3'- caGUCCG------CUUCg---CugUC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 84192 0.66 0.762396
Target:  5'- --uGGGaCGAGGC-ACAGgGcCGCCGCg -3'
miRNA:   3'- cagUCC-GCUUCGcUGUCgC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 158970 0.66 0.762396
Target:  5'- -cCGGGUGggGCcACGGCGaccucgGCUGCg -3'
miRNA:   3'- caGUCCGCuuCGcUGUCGCg-----CGGCGg -5'
24584 3' -60 NC_005264.1 + 74612 0.66 0.762396
Target:  5'- gGUCugcGuaGAAGCGAUcuuGGCGCGCUaCCg -3'
miRNA:   3'- -CAGu--CcgCUUCGCUG---UCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 122032 0.66 0.761473
Target:  5'- aGUCucGGCGAccccGCGGCaAGCggcuccgcucucgGCGCCGCg -3'
miRNA:   3'- -CAGu-CCGCUu---CGCUG-UCG-------------CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 154569 0.66 0.761473
Target:  5'- ---cGGCcugcaacGAGGCGGacacCAGgGCGCCGCUg -3'
miRNA:   3'- caguCCG-------CUUCGCU----GUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 71098 0.66 0.759626
Target:  5'- uGUCAacagccgcccucGGCccuGGUGAgcagauaaaggacaCAGCGCGCCGCUu -3'
miRNA:   3'- -CAGU------------CCGcu-UCGCU--------------GUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 42530 0.66 0.759626
Target:  5'- uGUguGGCGuGGGCG-CAGCuuccgcgcgucuucGCGCCGgCa -3'
miRNA:   3'- -CAguCCGC-UUCGCuGUCG--------------CGCGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.