miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 83164 0.66 0.756846
Target:  5'- uGUCGcGGgGAuggggagaauuugucAGCGGCAgGCGCGgCGCg -3'
miRNA:   3'- -CAGU-CCgCU---------------UCGCUGU-CGCGCgGCGg -5'
24584 3' -60 NC_005264.1 + 138421 0.66 0.753126
Target:  5'- -cCGGGCG-GGCGuguuUAaCGCGCCGCg -3'
miRNA:   3'- caGUCCGCuUCGCu---GUcGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 27948 0.66 0.753126
Target:  5'- -aCGGGCGccGCGucuuccaaacaACGGUGCG-CGCCc -3'
miRNA:   3'- caGUCCGCuuCGC-----------UGUCGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 103123 0.66 0.753126
Target:  5'- cGUCcGGCGcgguagccgccGGCG-CGGCGCGCgGCg -3'
miRNA:   3'- -CAGuCCGCu----------UCGCuGUCGCGCGgCGg -5'
24584 3' -60 NC_005264.1 + 98657 0.66 0.752193
Target:  5'- cGUCAGaCGAacGGUGuCGGCGCuagcuuagagggaGCCGCUa -3'
miRNA:   3'- -CAGUCcGCU--UCGCuGUCGCG-------------CGGCGG- -5'
24584 3' -60 NC_005264.1 + 95469 0.66 0.752193
Target:  5'- -gCGGGCGcAGCGA--GCGCGggcgcuacguuuuCCGCCc -3'
miRNA:   3'- caGUCCGCuUCGCUguCGCGC-------------GGCGG- -5'
24584 3' -60 NC_005264.1 + 45834 0.66 0.747515
Target:  5'- cGUCAuGCGccGCgcagaccgcccccaaGACuucgagucuGCGCGCCGCCa -3'
miRNA:   3'- -CAGUcCGCuuCG---------------CUGu--------CGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 22126 0.66 0.743755
Target:  5'- aGUUGGGCuucaacGAGcGCGAC-GCGCGCCuuagauugcGCCg -3'
miRNA:   3'- -CAGUCCG------CUU-CGCUGuCGCGCGG---------CGG- -5'
24584 3' -60 NC_005264.1 + 83223 0.66 0.743755
Target:  5'- --uGGGcCGuugcGCGugGGCGUcuagGCCGCCg -3'
miRNA:   3'- cagUCC-GCuu--CGCugUCGCG----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 104817 0.66 0.743755
Target:  5'- -gCGGGCGccGCacGACGGCcUGuCCGCCg -3'
miRNA:   3'- caGUCCGCuuCG--CUGUCGcGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 36191 0.66 0.743755
Target:  5'- gGUUGGGCGAaagAGCaGACcgcauGCGCGCagaccagaGCCc -3'
miRNA:   3'- -CAGUCCGCU---UCG-CUGu----CGCGCGg-------CGG- -5'
24584 3' -60 NC_005264.1 + 131970 0.66 0.743755
Target:  5'- aUCgAGaCGccGUugccuaccgGGCGGCGCGCCGCCg -3'
miRNA:   3'- cAG-UCcGCuuCG---------CUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 155218 0.66 0.743755
Target:  5'- gGUUGGGCGAaagAGCaGACcgcauGCGCGCagaccagaGCCc -3'
miRNA:   3'- -CAGUCCGCU---UCG-CUGu----CGCGCGg-------CGG- -5'
24584 3' -60 NC_005264.1 + 88100 0.66 0.743755
Target:  5'- cGUCGGGCacAGCGuCGGCcgGCGCgGUUg -3'
miRNA:   3'- -CAGUCCGcuUCGCuGUCG--CGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 29435 0.66 0.743755
Target:  5'- -gUAGGCuuuGggGCcACcaacgGGCuGCGCCGCCg -3'
miRNA:   3'- caGUCCG---CuuCGcUG-----UCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 38363 0.66 0.740926
Target:  5'- --gGGGCGGuuaggaccuccuccGGCGAgAGCGgCGaCGCCg -3'
miRNA:   3'- cagUCCGCU--------------UCGCUgUCGC-GCgGCGG- -5'
24584 3' -60 NC_005264.1 + 157390 0.66 0.740926
Target:  5'- --gGGGCGGuuaggaccuccuccGGCGAgAGCGgCGaCGCCg -3'
miRNA:   3'- cagUCCGCU--------------UCGCUgUCGC-GCgGCGG- -5'
24584 3' -60 NC_005264.1 + 107191 0.66 0.738088
Target:  5'- --gGGGcCGccaaaacuaaAGGCGGCGGCGCGCgcgguuggcauucggCGCCa -3'
miRNA:   3'- cagUCC-GC----------UUCGCUGUCGCGCG---------------GCGG- -5'
24584 3' -60 NC_005264.1 + 22045 0.66 0.734293
Target:  5'- uUCAGacCGAcGCcuugGACGGUaGCGCCGCCg -3'
miRNA:   3'- cAGUCc-GCUuCG----CUGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 116291 0.66 0.734293
Target:  5'- uUCGGGgGAGGCaugaaucugGGCuucuuGCGCGCCGg- -3'
miRNA:   3'- cAGUCCgCUUCG---------CUGu----CGCGCGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.