miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 121543 0.66 0.734293
Target:  5'- -gCGGGCcgauagcgugGAAGuCGACgcgGGCGgGCCGCUu -3'
miRNA:   3'- caGUCCG----------CUUC-GCUG---UCGCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 22045 0.66 0.734293
Target:  5'- uUCAGacCGAcGCcuugGACGGUaGCGCCGCCg -3'
miRNA:   3'- cAGUCc-GCUuCG----CUGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 116291 0.66 0.734293
Target:  5'- uUCGGGgGAGGCaugaaucugGGCuucuuGCGCGCCGg- -3'
miRNA:   3'- cAGUCCgCUUCG---------CUGu----CGCGCGGCgg -5'
24584 3' -60 NC_005264.1 + 71327 0.66 0.734293
Target:  5'- ---uGGCGAGuGCG-CGGCauucuaCGCCGCCg -3'
miRNA:   3'- caguCCGCUU-CGCuGUCGc-----GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 86150 0.66 0.734293
Target:  5'- cGUCAcGGUG-GGCGACAGCcugGUgGCCg -3'
miRNA:   3'- -CAGU-CCGCuUCGCUGUCGcg-CGgCGG- -5'
24584 3' -60 NC_005264.1 + 140054 0.66 0.734293
Target:  5'- -aCAGG---GGCGugAGCaGUGUCGCCg -3'
miRNA:   3'- caGUCCgcuUCGCugUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 60261 0.66 0.734293
Target:  5'- gGUCAcGCG-AGCuGCGGUgaGCGCCGCg -3'
miRNA:   3'- -CAGUcCGCuUCGcUGUCG--CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 65937 0.66 0.734293
Target:  5'- -aCAGGauuuGccGCGcCcucGCGCGCCGCCa -3'
miRNA:   3'- caGUCCg---CuuCGCuGu--CGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 116407 0.66 0.734293
Target:  5'- -gCAGGcCGAcgucgAGCGcaggGCGGCGUGCaGCCu -3'
miRNA:   3'- caGUCC-GCU-----UCGC----UGUCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 79719 0.66 0.734293
Target:  5'- -gCAGGCGGAGCuauACgAG-GUGCCGCa -3'
miRNA:   3'- caGUCCGCUUCGc--UG-UCgCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 46598 0.66 0.733342
Target:  5'- uGUCAcGGCGGAGCucccggcaccgucGugGGacCGCGUgGCCg -3'
miRNA:   3'- -CAGU-CCGCUUCG-------------CugUC--GCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 17920 0.67 0.728575
Target:  5'- -gCAGGCGAuacGCcuGuuuuguuuuucuaacGCcGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGCUu--CG--C---------------UGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 127800 0.67 0.724747
Target:  5'- --gAGGCGAA-CGGCGG-GCGUCgGCCa -3'
miRNA:   3'- cagUCCGCUUcGCUGUCgCGCGG-CGG- -5'
24584 3' -60 NC_005264.1 + 8774 0.67 0.724747
Target:  5'- --gAGGCGAA-CGGCGG-GCGUCgGCCa -3'
miRNA:   3'- cagUCCGCUUcGCUGUCgCGCGG-CGG- -5'
24584 3' -60 NC_005264.1 + 155683 0.67 0.724747
Target:  5'- --gGGGUGAcuCGGCAGgGCGuaGCCu -3'
miRNA:   3'- cagUCCGCUucGCUGUCgCGCggCGG- -5'
24584 3' -60 NC_005264.1 + 10460 0.67 0.724747
Target:  5'- --aGGGCaGAGUGACcGC-CGCCGUCa -3'
miRNA:   3'- cagUCCGcUUCGCUGuCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 27506 0.67 0.724747
Target:  5'- --gAGGCGcAGUGGCGGgcUGgGUCGCCg -3'
miRNA:   3'- cagUCCGCuUCGCUGUC--GCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 3593 0.67 0.723788
Target:  5'- uGUCAGGUGAguaGGCcguggugGACGGUggGCGCUGUg -3'
miRNA:   3'- -CAGUCCGCU---UCG-------CUGUCG--CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 92162 0.67 0.720907
Target:  5'- -gCGGGCGuaaaaauugccuGcCGGCGGCGCcGCgGCCa -3'
miRNA:   3'- caGUCCGCuu----------C-GCUGUCGCG-CGgCGG- -5'
24584 3' -60 NC_005264.1 + 113397 0.67 0.715126
Target:  5'- -gCAGGCGAGcugcGCGACGGCagagagcuccauGUGCgGCa -3'
miRNA:   3'- caGUCCGCUU----CGCUGUCG------------CGCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.