miRNA display CGI


Results 81 - 100 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 113397 0.67 0.715126
Target:  5'- -gCAGGCGAGcugcGCGACGGCagagagcuccauGUGCgGCa -3'
miRNA:   3'- caGUCCGCUU----CGCUGUCG------------CGCGgCGg -5'
24584 3' -60 NC_005264.1 + 44838 0.67 0.715126
Target:  5'- gGUC-GGCGAAGUGuccgucCGG-GUGCCGUCg -3'
miRNA:   3'- -CAGuCCGCUUCGCu-----GUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 100916 0.67 0.715126
Target:  5'- cUCuucGCGcAAGCGGCGGCGC-CCGUg -3'
miRNA:   3'- cAGuc-CGC-UUCGCUGUCGCGcGGCGg -5'
24584 3' -60 NC_005264.1 + 96223 0.67 0.715126
Target:  5'- cUCGGGCc--GCGACGGCGC-CgGCa -3'
miRNA:   3'- cAGUCCGcuuCGCUGUCGCGcGgCGg -5'
24584 3' -60 NC_005264.1 + 124440 0.67 0.705438
Target:  5'- --aGGGCGuacGCGGCaucugucucGGCGuCGCCGCUc -3'
miRNA:   3'- cagUCCGCuu-CGCUG---------UCGC-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 64286 0.67 0.705438
Target:  5'- -gCGGGUGccgaguaucGCGgcccACAGCGCGuuGCCg -3'
miRNA:   3'- caGUCCGCuu-------CGC----UGUCGCGCggCGG- -5'
24584 3' -60 NC_005264.1 + 127020 0.67 0.705438
Target:  5'- -aCGGGCcgccauugcGggGcCGGCAGagGCGCcCGCCa -3'
miRNA:   3'- caGUCCG---------CuuC-GCUGUCg-CGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 7993 0.67 0.705438
Target:  5'- -aCGGGCcgccauugcGggGcCGGCAGagGCGCcCGCCa -3'
miRNA:   3'- caGUCCG---------CuuC-GCUGUCg-CGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 47934 0.67 0.705438
Target:  5'- -gCAGGCGGaggacGGCGAgacccggucCAGCGUGcCCGUg -3'
miRNA:   3'- caGUCCGCU-----UCGCU---------GUCGCGC-GGCGg -5'
24584 3' -60 NC_005264.1 + 4333 0.67 0.705438
Target:  5'- -gCAGGCcugccccuGGCGGCugagcGCGCGUCGCa -3'
miRNA:   3'- caGUCCGcu------UCGCUGu----CGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 39399 0.67 0.705438
Target:  5'- cGUC-GGCGAAgGgGGCAcUGCGCUGCUc -3'
miRNA:   3'- -CAGuCCGCUU-CgCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 45780 0.67 0.705438
Target:  5'- --uGGGCGccgGAGCGGCuauuGCGgucuggGCCGCCg -3'
miRNA:   3'- cagUCCGC---UUCGCUGu---CGCg-----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 5413 0.67 0.705438
Target:  5'- --aGGGCGuacGCGGCaucugucucGGCGuCGCCGCUc -3'
miRNA:   3'- cagUCCGCuu-CGCUG---------UCGC-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 9605 0.67 0.705438
Target:  5'- -aCAGGCGAcGCGAacuGCGCugaGCagGCCa -3'
miRNA:   3'- caGUCCGCUuCGCUgu-CGCG---CGg-CGG- -5'
24584 3' -60 NC_005264.1 + 155136 0.67 0.705438
Target:  5'- cGUUAGG-GAGGCGAUAGUGCuuuuGUgGUCa -3'
miRNA:   3'- -CAGUCCgCUUCGCUGUCGCG----CGgCGG- -5'
24584 3' -60 NC_005264.1 + 108577 0.67 0.705438
Target:  5'- aUCuuGGCGAAGCGcucccuGCGGCGCucuaGCaGCCu -3'
miRNA:   3'- cAGu-CCGCUUCGC------UGUCGCG----CGgCGG- -5'
24584 3' -60 NC_005264.1 + 128632 0.67 0.705438
Target:  5'- -aCAGGCGAcGCGAacuGCGCugaGCagGCCa -3'
miRNA:   3'- caGUCCGCUuCGCUgu-CGCG---CGg-CGG- -5'
24584 3' -60 NC_005264.1 + 123360 0.67 0.705438
Target:  5'- -gCAGGCcugccccuGGCGGCugagcGCGCGUCGCa -3'
miRNA:   3'- caGUCCGcu------UCGCUGu----CGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 158426 0.67 0.705438
Target:  5'- cGUC-GGCGAAgGgGGCAcUGCGCUGCUc -3'
miRNA:   3'- -CAGuCCGCUU-CgCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 25907 0.67 0.705438
Target:  5'- -cCAGGCGAacagauGGCGGgGG-GCGCUGUa -3'
miRNA:   3'- caGUCCGCU------UCGCUgUCgCGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.