miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 137 0.74 0.331726
Target:  5'- ---cGGCGGccgccuuaacgccGGCGcGCAGCGCGCCGaCCg -3'
miRNA:   3'- caguCCGCU-------------UCGC-UGUCGCGCGGC-GG- -5'
24584 3' -60 NC_005264.1 + 1012 0.67 0.695692
Target:  5'- cGUguGGUGggGgGGCAG-GgGCCGUUc -3'
miRNA:   3'- -CAguCCGCuuCgCUGUCgCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 2834 0.66 0.780602
Target:  5'- ---uGGCGGAGgGcCGGuCGCGCucgCGCCg -3'
miRNA:   3'- caguCCGCUUCgCuGUC-GCGCG---GCGG- -5'
24584 3' -60 NC_005264.1 + 2906 0.73 0.386269
Target:  5'- --aGGGCGAcGGCGAgAGCGacggaGUCGCCg -3'
miRNA:   3'- cagUCCGCU-UCGCUgUCGCg----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 3593 0.67 0.723788
Target:  5'- uGUCAGGUGAguaGGCcguggugGACGGUggGCGCUGUg -3'
miRNA:   3'- -CAGUCCGCU---UCG-------CUGUCG--CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 4333 0.67 0.705438
Target:  5'- -gCAGGCcugccccuGGCGGCugagcGCGCGUCGCa -3'
miRNA:   3'- caGUCCGcu------UCGCUGu----CGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 4670 0.7 0.518993
Target:  5'- aUCAGGgaauaccugcguCGggGCGAguG-GCGCCGCg -3'
miRNA:   3'- cAGUCC------------GCuuCGCUguCgCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 5413 0.67 0.705438
Target:  5'- --aGGGCGuacGCGGCaucugucucGGCGuCGCCGCUc -3'
miRNA:   3'- cagUCCGCuu-CGCUG---------UCGC-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 5807 0.69 0.596781
Target:  5'- -cCAcGGCGuucaauaguccGGCGGCGGUG-GCCGCCa -3'
miRNA:   3'- caGU-CCGCu----------UCGCUGUCGCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 6126 0.7 0.547788
Target:  5'- aUCAGGUGcgggaGGGCGAgGGC-CGCgCGCCc -3'
miRNA:   3'- cAGUCCGC-----UUCGCUgUCGcGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 6464 0.7 0.500132
Target:  5'- cUC-GGCGgcGCGGCgaacgucggGGUGCGCgGCCa -3'
miRNA:   3'- cAGuCCGCuuCGCUG---------UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 6628 0.7 0.516146
Target:  5'- -gCAGGUGAAGUuggaccugcgccccGACauauAGCcgGCGCCGCCa -3'
miRNA:   3'- caGUCCGCUUCG--------------CUG----UCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 6815 0.69 0.567263
Target:  5'- gGUCAGGguguugccgGAGGCGGCGGCGacuauGgCGCCa -3'
miRNA:   3'- -CAGUCCg--------CUUCGCUGUCGCg----CgGCGG- -5'
24584 3' -60 NC_005264.1 + 7059 0.7 0.509526
Target:  5'- ---cGGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caguCCGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 7770 0.7 0.509526
Target:  5'- aGUCGGGCacuGAGCGAgGGgGCGCUGg- -3'
miRNA:   3'- -CAGUCCGc--UUCGCUgUCgCGCGGCgg -5'
24584 3' -60 NC_005264.1 + 7993 0.67 0.705438
Target:  5'- -aCGGGCcgccauugcGggGcCGGCAGagGCGCcCGCCa -3'
miRNA:   3'- caGUCCG---------CuuC-GCUGUCg-CGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 8290 0.69 0.595792
Target:  5'- --aAGGCGcccguGGGCGACGGgggcaccUGCGCCGCg -3'
miRNA:   3'- cagUCCGC-----UUCGCUGUC-------GCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 8774 0.67 0.724747
Target:  5'- --gAGGCGAA-CGGCGG-GCGUCgGCCa -3'
miRNA:   3'- cagUCCGCUUcGCUGUCgCGCGG-CGG- -5'
24584 3' -60 NC_005264.1 + 9491 0.68 0.635454
Target:  5'- cGUCA-GCGAgucagccAGCGucaGGCGCGgCGCCc -3'
miRNA:   3'- -CAGUcCGCU-------UCGCug-UCGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 9605 0.67 0.705438
Target:  5'- -aCAGGCGAcGCGAacuGCGCugaGCagGCCa -3'
miRNA:   3'- caGUCCGCUuCGCUgu-CGCG---CGg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.