miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 9868 0.73 0.378238
Target:  5'- aUCGGGCGcGGUccCGGCGCGCCacgGCCu -3'
miRNA:   3'- cAGUCCGCuUCGcuGUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 10460 0.67 0.724747
Target:  5'- --aGGGCaGAGUGACcGC-CGCCGUCa -3'
miRNA:   3'- cagUCCGcUUCGCUGuCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 10547 0.66 0.771557
Target:  5'- cUCAGG-GgcGCGGaucGCGCGuUCGCCg -3'
miRNA:   3'- cAGUCCgCuuCGCUgu-CGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 11051 0.67 0.676059
Target:  5'- aUCaAGGCGggGCcuGGCGGgGCaaguacCCGCCu -3'
miRNA:   3'- cAG-UCCGCuuCG--CUGUCgCGc-----GGCGG- -5'
24584 3' -60 NC_005264.1 + 12009 0.7 0.547788
Target:  5'- cGUCA--CGAccuGCGGCGGCGacCGCCGCCc -3'
miRNA:   3'- -CAGUccGCUu--CGCUGUCGC--GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 12038 0.67 0.68982
Target:  5'- cUUAGGCGAAGCGcccgcgaaccauccCGGUGCGa-GCCa -3'
miRNA:   3'- cAGUCCGCUUCGCu-------------GUCGCGCggCGG- -5'
24584 3' -60 NC_005264.1 + 12194 0.71 0.48158
Target:  5'- --gAGGCauggucgcaGGGCGAU-GCGCGCCGCCu -3'
miRNA:   3'- cagUCCGc--------UUCGCUGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 12944 0.67 0.676059
Target:  5'- aUCgAGaCGccguugccuaccGGGCGGC-GCGCGCCGCCg -3'
miRNA:   3'- cAG-UCcGC------------UUCGCUGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 13421 0.68 0.636447
Target:  5'- ---cGGCGc-GCGACcGC-CGCCGCCg -3'
miRNA:   3'- caguCCGCuuCGCUGuCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 16014 0.66 0.762396
Target:  5'- -gCAGGCGA--CGACcGcCGCGCCuCCg -3'
miRNA:   3'- caGUCCGCUucGCUGuC-GCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 16485 0.7 0.528529
Target:  5'- --gGGGCGAcgagucacauGCGucauuCGGCGCGCaCGCCg -3'
miRNA:   3'- cagUCCGCUu---------CGCu----GUCGCGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 16567 0.69 0.586909
Target:  5'- --uGGGCGGcgccggGGCGGCGGCGCacaugacuccgGCCGaCCc -3'
miRNA:   3'- cagUCCGCU------UCGCUGUCGCG-----------CGGC-GG- -5'
24584 3' -60 NC_005264.1 + 17011 0.67 0.694715
Target:  5'- cUCAGGgaCGGcaaaGGCGgcgaucgucgccaGCAGCGCGgCCGCUa -3'
miRNA:   3'- cAGUCC--GCU----UCGC-------------UGUCGCGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 17709 0.7 0.500132
Target:  5'- uGUCGGGUGuuAGgGAaauuaccuGCGCGCCGCg -3'
miRNA:   3'- -CAGUCCGCu-UCgCUgu------CGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 17920 0.67 0.728575
Target:  5'- -gCAGGCGAuacGCcuGuuuuguuuuucuaacGCcGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGCUu--CG--C---------------UGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 18049 0.74 0.339794
Target:  5'- ----cGCGAAGCGGCGGCGCcGCgaGCCa -3'
miRNA:   3'- cagucCGCUUCGCUGUCGCG-CGg-CGG- -5'
24584 3' -60 NC_005264.1 + 18463 0.67 0.692759
Target:  5'- cGUCGGGCcuagguaagugaucGAGGUGcACAGUGacguagauguCGCCGCUg -3'
miRNA:   3'- -CAGUCCG--------------CUUCGC-UGUCGC----------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 18560 0.69 0.606677
Target:  5'- cGUCAGuCGGAGCGGCAuC-CGCCgGCCc -3'
miRNA:   3'- -CAGUCcGCUUCGCUGUcGcGCGG-CGG- -5'
24584 3' -60 NC_005264.1 + 19419 0.7 0.547788
Target:  5'- --gAGGCGAGGCGcCGG-GUGUgGCCg -3'
miRNA:   3'- cagUCCGCUUCGCuGUCgCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 19426 0.68 0.666187
Target:  5'- -aCAGGCuGAAGCGuauaaGGCGCGaggCGCUc -3'
miRNA:   3'- caGUCCG-CUUCGCug---UCGCGCg--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.