miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 20138 0.88 0.03993
Target:  5'- -gCGGGC-AGGCGAUGGCGCGCCGCCg -3'
miRNA:   3'- caGUCCGcUUCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 21743 0.68 0.656289
Target:  5'- aGUgGGGCcuucGGCGGCGGCcgucuugaGCGCCGUa -3'
miRNA:   3'- -CAgUCCGcu--UCGCUGUCG--------CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 21985 0.68 0.626517
Target:  5'- aGUCGgccuGGCGcAAGCGAaaGGCGCGgCGCg -3'
miRNA:   3'- -CAGU----CCGC-UUCGCUg-UCGCGCgGCGg -5'
24584 3' -60 NC_005264.1 + 22045 0.66 0.734293
Target:  5'- uUCAGacCGAcGCcuugGACGGUaGCGCCGCCg -3'
miRNA:   3'- cAGUCc-GCUuCG----CUGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 22126 0.66 0.743755
Target:  5'- aGUUGGGCuucaacGAGcGCGAC-GCGCGCCuuagauugcGCCg -3'
miRNA:   3'- -CAGUCCG------CUU-CGCUGuCGCGCGG---------CGG- -5'
24584 3' -60 NC_005264.1 + 22753 0.73 0.350267
Target:  5'- --uGGGCGAAGCGAUAGCggcgggcaaugagggGCGCgGCg -3'
miRNA:   3'- cagUCCGCUUCGCUGUCG---------------CGCGgCGg -5'
24584 3' -60 NC_005264.1 + 23991 0.7 0.509526
Target:  5'- --aAGGgGAGGUGGaugaGGCGgGCCGCUg -3'
miRNA:   3'- cagUCCgCUUCGCUg---UCGCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 24476 0.68 0.666187
Target:  5'- cGUCGGcGUGAcguuGCGAUAGuCGCGUucgggCGCCu -3'
miRNA:   3'- -CAGUC-CGCUu---CGCUGUC-GCGCG-----GCGG- -5'
24584 3' -60 NC_005264.1 + 25907 0.67 0.705438
Target:  5'- -cCAGGCGAacagauGGCGGgGG-GCGCUGUa -3'
miRNA:   3'- caGUCCGCU------UCGCUgUCgCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 26355 0.68 0.616592
Target:  5'- aGUCuuGuGCGccGCGGCAggcuGCGCGgCGCCg -3'
miRNA:   3'- -CAGu-C-CGCuuCGCUGU----CGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 26798 0.66 0.762396
Target:  5'- -gCGGGCuuccacGAGGagaaGugGGcCGCGCCGCUc -3'
miRNA:   3'- caGUCCG------CUUCg---CugUC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 27506 0.67 0.724747
Target:  5'- --gAGGCGcAGUGGCGGgcUGgGUCGCCg -3'
miRNA:   3'- cagUCCGCuUCGCUGUC--GCgCGGCGG- -5'
24584 3' -60 NC_005264.1 + 27948 0.66 0.753126
Target:  5'- -aCGGGCGccGCGucuuccaaacaACGGUGCG-CGCCc -3'
miRNA:   3'- caGUCCGCuuCGC-----------UGUCGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 28015 0.66 0.771557
Target:  5'- -cCAGGUcggucgGggGCGGgaggucuucCGGCGCGCgcgaCGCCg -3'
miRNA:   3'- caGUCCG------CuuCGCU---------GUCGCGCG----GCGG- -5'
24584 3' -60 NC_005264.1 + 29435 0.66 0.743755
Target:  5'- -gUAGGCuuuGggGCcACcaacgGGCuGCGCCGCCg -3'
miRNA:   3'- caGUCCG---CuuCGcUG-----UCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 30116 0.67 0.675073
Target:  5'- -gCGGGCGgcGCGGCAccgagcuGCGgCGCauugGCCg -3'
miRNA:   3'- caGUCCGCuuCGCUGU-------CGC-GCGg---CGG- -5'
24584 3' -60 NC_005264.1 + 30390 0.68 0.626517
Target:  5'- cGUCucGGCG--GCGGCGGuCGCG-CGCCg -3'
miRNA:   3'- -CAGu-CCGCuuCGCUGUC-GCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 30612 0.67 0.685896
Target:  5'- ---cGGCGAcGGCGGCGGCGaCGgauCCGCg -3'
miRNA:   3'- caguCCGCU-UCGCUGUCGC-GC---GGCGg -5'
24584 3' -60 NC_005264.1 + 30837 0.81 0.120132
Target:  5'- -aCGGGCucgcgucgucgucGGCGGCGGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGcu-----------UCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 31604 0.75 0.271656
Target:  5'- cUCuGGCGAGGCGGC-GCGCaUCGCCc -3'
miRNA:   3'- cAGuCCGCUUCGCUGuCGCGcGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.