miRNA display CGI


Results 61 - 80 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 31782 0.75 0.297509
Target:  5'- -gCGGGCGcuucgccuaaGGGCGGCGGU-CGCCGCCg -3'
miRNA:   3'- caGUCCGC----------UUCGCUGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 32076 0.68 0.626517
Target:  5'- --gAGuGCGaAAGUGACguaggGGgGCGCCGCCc -3'
miRNA:   3'- cagUC-CGC-UUCGCUG-----UCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 32373 0.73 0.370319
Target:  5'- uUCuGGCGAGGaugcCGGCGGCcgGCGuCCGCCg -3'
miRNA:   3'- cAGuCCGCUUC----GCUGUCG--CGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 33914 0.66 0.770646
Target:  5'- -aCAuGGCGGAGCGAgCccacacgaacaugAGCcCGCCGUCg -3'
miRNA:   3'- caGU-CCGCUUCGCU-G-------------UCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 34116 0.66 0.762396
Target:  5'- -gCGGcGCGAaacAGCGucgaGGCGCGagcCCGCCu -3'
miRNA:   3'- caGUC-CGCU---UCGCug--UCGCGC---GGCGG- -5'
24584 3' -60 NC_005264.1 + 35492 0.69 0.596781
Target:  5'- -cUAGGgGA--CGACGGCGaCGCCGCg -3'
miRNA:   3'- caGUCCgCUucGCUGUCGC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 35780 0.72 0.394413
Target:  5'- --gAGGCGGAGgGcGCGGUgGCGCCGUCg -3'
miRNA:   3'- cagUCCGCUUCgC-UGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 36191 0.66 0.743755
Target:  5'- gGUUGGGCGAaagAGCaGACcgcauGCGCGCagaccagaGCCc -3'
miRNA:   3'- -CAGUCCGCU---UCG-CUGu----CGCGCGg-------CGG- -5'
24584 3' -60 NC_005264.1 + 36289 0.68 0.643396
Target:  5'- -gUAGGCGAGGaGAgGGCGgacgucgucgcuauCGCUGCCg -3'
miRNA:   3'- caGUCCGCUUCgCUgUCGC--------------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 36485 0.68 0.626517
Target:  5'- ---cGGCaAGGCGGCguuuucgugcgaAGCGCGCgGCCu -3'
miRNA:   3'- caguCCGcUUCGCUG------------UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 36746 0.71 0.490816
Target:  5'- -gCAGcGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caGUC-CGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 36821 0.66 0.771557
Target:  5'- -gCAGGCGAGGCG-CGGCGaagaUCGUa -3'
miRNA:   3'- caGUCCGCUUCGCuGUCGCgc--GGCGg -5'
24584 3' -60 NC_005264.1 + 37123 0.69 0.567263
Target:  5'- --aGGGCGAGGCGGCcgucucGGCcuCGCUGCUg -3'
miRNA:   3'- cagUCCGCUUCGCUG------UCGc-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 37549 1.12 0.000858
Target:  5'- cGUCAGGCGAAGCGACAGCGCGCCGCCg -3'
miRNA:   3'- -CAGUCCGCUUCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 37624 0.66 0.780602
Target:  5'- cGUCucgcacGGCcauGGCGAcCGGCGUGCC-CCa -3'
miRNA:   3'- -CAGu-----CCGcu-UCGCU-GUCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 37664 0.7 0.500132
Target:  5'- -gCAcGCGAugcGCGACgGGCGCGCgGCCc -3'
miRNA:   3'- caGUcCGCUu--CGCUG-UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 37788 0.83 0.092134
Target:  5'- cUCgAGGCGAgcGGCGGagaagaGGCGCGCCGCCg -3'
miRNA:   3'- cAG-UCCGCU--UCGCUg-----UCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 37986 0.79 0.152819
Target:  5'- -cCAGGCG-AGUGGCGGCcacCGCCGCCg -3'
miRNA:   3'- caGUCCGCuUCGCUGUCGc--GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 38363 0.66 0.740926
Target:  5'- --gGGGCGGuuaggaccuccuccGGCGAgAGCGgCGaCGCCg -3'
miRNA:   3'- cagUCCGCU--------------UCGCUgUCGC-GCgGCGG- -5'
24584 3' -60 NC_005264.1 + 39399 0.67 0.705438
Target:  5'- cGUC-GGCGAAgGgGGCAcUGCGCUGCUc -3'
miRNA:   3'- -CAGuCCGCUU-CgCUGUcGCGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.