miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 162689 0.68 0.6156
Target:  5'- gGUCGGcGCGcugcGCGcCGGCGUuaaggcgGCCGCCg -3'
miRNA:   3'- -CAGUC-CGCuu--CGCuGUCGCG-------CGGCGG- -5'
24584 3' -60 NC_005264.1 + 162635 0.66 0.780602
Target:  5'- aUCGGGggcuacgauuuCGAGGCucggaAGCGCGCCGgCg -3'
miRNA:   3'- cAGUCC-----------GCUUCGcug--UCGCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 162176 0.68 0.626517
Target:  5'- -aCGGGUGGAGCGgggaggggGgGGCGCGUgaGCCu -3'
miRNA:   3'- caGUCCGCUUCGC--------UgUCGCGCGg-CGG- -5'
24584 3' -60 NC_005264.1 + 160890 0.66 0.780602
Target:  5'- cUCGGGgGggGgGGCAaCG-GCCGCg -3'
miRNA:   3'- cAGUCCgCuuCgCUGUcGCgCGGCGg -5'
24584 3' -60 NC_005264.1 + 159995 0.7 0.547788
Target:  5'- -gCGGGCGAcGGCGcgAGCGCGaccggcccuCCGCCa -3'
miRNA:   3'- caGUCCGCU-UCGCugUCGCGC---------GGCGG- -5'
24584 3' -60 NC_005264.1 + 159779 0.69 0.5614
Target:  5'- aGUCGcGGCGAgacAGCGugccaguuaggagacGCAGCgGCGCUGCa -3'
miRNA:   3'- -CAGU-CCGCU---UCGC---------------UGUCG-CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 159401 0.75 0.271034
Target:  5'- -aCGGGCGGcggaccccugagaAGUGG-GGCGCGCCGCCu -3'
miRNA:   3'- caGUCCGCU-------------UCGCUgUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 159192 0.69 0.576085
Target:  5'- cGUCGagacGGCGGccaucGCGACgaaugucAGCGCGCCcGCCc -3'
miRNA:   3'- -CAGU----CCGCUu----CGCUG-------UCGCGCGG-CGG- -5'
24584 3' -60 NC_005264.1 + 158970 0.66 0.762396
Target:  5'- -cCGGGUGggGCcACGGCGaccucgGCUGCg -3'
miRNA:   3'- caGUCCGCuuCGcUGUCGCg-----CGGCGg -5'
24584 3' -60 NC_005264.1 + 158844 0.7 0.509526
Target:  5'- --uGGGCGAGGaGGCA-UGUGCCGCCc -3'
miRNA:   3'- cagUCCGCUUCgCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 158478 0.7 0.524707
Target:  5'- --gGGGCGGuggaaagcaugcuGCGACGcGCGCucaGCCGCCa -3'
miRNA:   3'- cagUCCGCUu------------CGCUGU-CGCG---CGGCGG- -5'
24584 3' -60 NC_005264.1 + 158426 0.67 0.705438
Target:  5'- cGUC-GGCGAAgGgGGCAcUGCGCUGCUc -3'
miRNA:   3'- -CAGuCCGCUU-CgCUGUcGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 157390 0.66 0.740926
Target:  5'- --gGGGCGGuuaggaccuccuccGGCGAgAGCGgCGaCGCCg -3'
miRNA:   3'- cagUCCGCU--------------UCGCUgUCGC-GCgGCGG- -5'
24584 3' -60 NC_005264.1 + 157013 0.79 0.152819
Target:  5'- -cCAGGCG-AGUGGCGGCcacCGCCGCCg -3'
miRNA:   3'- caGUCCGCuUCGCUGUCGc--GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 156838 0.72 0.411028
Target:  5'- uUCAGGUGcgcacAGCGACcGcCGCGCUGCUa -3'
miRNA:   3'- cAGUCCGCu----UCGCUGuC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 156690 0.7 0.500132
Target:  5'- -gCAcGCGAugcGCGACgGGCGCGCgGCCc -3'
miRNA:   3'- caGUcCGCUu--CGCUG-UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 156651 0.66 0.780602
Target:  5'- cGUCucgcacGGCcauGGCGAcCGGCGUGCC-CCa -3'
miRNA:   3'- -CAGu-----CCGcu-UCGCU-GUCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 156150 0.69 0.567263
Target:  5'- --aGGGCGAGGCGGCcgucucGGCcuCGCUGCUg -3'
miRNA:   3'- cagUCCGCUUCGCUG------UCGc-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 155772 0.71 0.490816
Target:  5'- -gCAGcGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caGUC-CGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 155683 0.67 0.724747
Target:  5'- --gGGGUGAcuCGGCAGgGCGuaGCCu -3'
miRNA:   3'- cagUCCGCUucGCUGUCgCGCggCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.