miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 155316 0.68 0.643396
Target:  5'- -gUAGGCGAGGaGAgGGCGgacgucgucgcuauCGCUGCCg -3'
miRNA:   3'- caGUCCGCUUCgCUgUCGC--------------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 155218 0.66 0.743755
Target:  5'- gGUUGGGCGAaagAGCaGACcgcauGCGCGCagaccagaGCCc -3'
miRNA:   3'- -CAGUCCGCU---UCG-CUGu----CGCGCGg-------CGG- -5'
24584 3' -60 NC_005264.1 + 155136 0.67 0.705438
Target:  5'- cGUUAGG-GAGGCGAUAGUGCuuuuGUgGUCa -3'
miRNA:   3'- -CAGUCCgCUUCGCUGUCGCG----CGgCGG- -5'
24584 3' -60 NC_005264.1 + 154806 0.72 0.394413
Target:  5'- --gAGGCGGAGgGcGCGGUgGCGCCGUCg -3'
miRNA:   3'- cagUCCGCUUCgC-UGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 154569 0.66 0.761473
Target:  5'- ---cGGCcugcaacGAGGCGGacacCAGgGCGCCGCUg -3'
miRNA:   3'- caguCCG-------CUUCGCU----GUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 154519 0.69 0.596781
Target:  5'- -cUAGGgGA--CGACGGCGaCGCCGCg -3'
miRNA:   3'- caGUCCgCUucGCUGUCGC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 153354 0.69 0.606677
Target:  5'- -aCGGGgGAGGCGGCAgacaagacGCGCGaaGCg -3'
miRNA:   3'- caGUCCgCUUCGCUGU--------CGCGCggCGg -5'
24584 3' -60 NC_005264.1 + 153143 0.66 0.762396
Target:  5'- -gCGGcGCGAaacAGCGucgaGGCGCGagcCCGCCu -3'
miRNA:   3'- caGUC-CGCU---UCGCug--UCGCGC---GGCGG- -5'
24584 3' -60 NC_005264.1 + 153084 0.67 0.715126
Target:  5'- -gUAGGUGGgagcacGGCGGCuuGCcUGCCGCCg -3'
miRNA:   3'- caGUCCGCU------UCGCUGu-CGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 151400 0.73 0.370319
Target:  5'- uUCuGGCGAGGaugcCGGCGGCcgGCGuCCGCCg -3'
miRNA:   3'- cAGuCCGCUUC----GCUGUCG--CGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 151103 0.68 0.626517
Target:  5'- --gAGuGCGaAAGUGACguaggGGgGCGCCGCCc -3'
miRNA:   3'- cagUC-CGC-UUCGCUG-----UCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 150808 0.75 0.297509
Target:  5'- -gCGGGCGcuucgccuaaGGGCGGCGGU-CGCCGCCg -3'
miRNA:   3'- caGUCCGC----------UUCGCUGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 150804 0.67 0.676059
Target:  5'- uGUgGGGCaGGAGCG-CAGCGa-CUGCCc -3'
miRNA:   3'- -CAgUCCG-CUUCGCuGUCGCgcGGCGG- -5'
24584 3' -60 NC_005264.1 + 150631 0.75 0.271656
Target:  5'- cUCuGGCGAGGCGGC-GCGCaUCGCCc -3'
miRNA:   3'- cAGuCCGCUUCGCUGuCGCGcGGCGG- -5'
24584 3' -60 NC_005264.1 + 150121 0.72 0.411028
Target:  5'- aGUUGGGCGGAGCaugucaGAgGGCccGCGCaCGCCa -3'
miRNA:   3'- -CAGUCCGCUUCG------CUgUCG--CGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 149863 0.81 0.120132
Target:  5'- -aCGGGCucgcgucgucgucGGCGGCGGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGcu-----------UCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 149639 0.67 0.685896
Target:  5'- ---cGGCGAcGGCGGCGGCGaCGgauCCGCg -3'
miRNA:   3'- caguCCGCU-UCGCUGUCGC-GC---GGCGg -5'
24584 3' -60 NC_005264.1 + 149417 0.68 0.626517
Target:  5'- cGUCucGGCG--GCGGCGGuCGCG-CGCCg -3'
miRNA:   3'- -CAGu-CCGCuuCGCUGUC-GCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 146750 0.67 0.694715
Target:  5'- --aGGGCGGcggacccGGCaACAGCaaGCGCCGCg -3'
miRNA:   3'- cagUCCGCU-------UCGcUGUCG--CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 146256 0.7 0.528529
Target:  5'- gGUCGGcCGGAGU--CAuGUGCGCCGCCg -3'
miRNA:   3'- -CAGUCcGCUUCGcuGU-CGCGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.