miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 145930 0.69 0.594804
Target:  5'- gGUCAGcGCGGGcaugggccucaccGaCGACGGCGacauaucguuugcCGCCGCCg -3'
miRNA:   3'- -CAGUC-CGCUU-------------C-GCUGUCGC-------------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 142693 0.73 0.386269
Target:  5'- cUUGGGCGc--CGGCGGCGCGCCacGCCu -3'
miRNA:   3'- cAGUCCGCuucGCUGUCGCGCGG--CGG- -5'
24584 3' -60 NC_005264.1 + 141082 0.69 0.606677
Target:  5'- aGUUAcGGCGcucaaGACGGC-CGCCGCCg -3'
miRNA:   3'- -CAGU-CCGCuucg-CUGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 140897 0.7 0.536204
Target:  5'- cUCGGGCaucagaccaucGAAGCggcaaccguugaaGACAGCacuacgaccgcacGCGCCGCCg -3'
miRNA:   3'- cAGUCCG-----------CUUCG-------------CUGUCG-------------CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 140250 0.7 0.538129
Target:  5'- --gAGGUcucGGCGACGGUGaCGCCGCUu -3'
miRNA:   3'- cagUCCGcu-UCGCUGUCGC-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 140115 0.68 0.665198
Target:  5'- -cCGGGC--AGCaGACAcacgcuuGCGCGCCGCa -3'
miRNA:   3'- caGUCCGcuUCG-CUGU-------CGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 140054 0.66 0.734293
Target:  5'- -aCAGG---GGCGugAGCaGUGUCGCCg -3'
miRNA:   3'- caGUCCgcuUCGCugUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 139101 0.67 0.695692
Target:  5'- cGUCGcGGCugcugcuGAGCGGCGGCGUG-UGCCc -3'
miRNA:   3'- -CAGU-CCGc------UUCGCUGUCGCGCgGCGG- -5'
24584 3' -60 NC_005264.1 + 138421 0.66 0.753126
Target:  5'- -cCGGGCG-GGCGuguuUAaCGCGCCGCg -3'
miRNA:   3'- caGUCCGCuUCGCu---GUcGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 137828 0.69 0.567263
Target:  5'- cUCAGGaGAGGCauGCAGCGCcugaGCCGCa -3'
miRNA:   3'- cAGUCCgCUUCGc-UGUCGCG----CGGCGg -5'
24584 3' -60 NC_005264.1 + 137288 0.67 0.695692
Target:  5'- -cCuGGaCGAGcGCGACaAGCGCcuuguccgcGCCGCCu -3'
miRNA:   3'- caGuCC-GCUU-CGCUG-UCGCG---------CGGCGG- -5'
24584 3' -60 NC_005264.1 + 137210 0.68 0.666187
Target:  5'- ----cGCGGAGCG-CGGCcccacCGCCGCCg -3'
miRNA:   3'- cagucCGCUUCGCuGUCGc----GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 136761 0.68 0.655299
Target:  5'- uUCgAGGCGAagaccagcccAGUGAguccuuuCGGCGCGUgGCCg -3'
miRNA:   3'- cAG-UCCGCU----------UCGCU-------GUCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 134966 0.68 0.666187
Target:  5'- -cCAGacaCGAcaaaaaGGCGGCGGCGCauugggcggauGCCGCCg -3'
miRNA:   3'- caGUCc--GCU------UCGCUGUCGCG-----------CGGCGG- -5'
24584 3' -60 NC_005264.1 + 133378 0.66 0.770646
Target:  5'- cUC-GGCGAGagucaucGCGGCGGCGCaGCCcguuggugGCCc -3'
miRNA:   3'- cAGuCCGCUU-------CGCUGUCGCG-CGG--------CGG- -5'
24584 3' -60 NC_005264.1 + 133272 0.68 0.636447
Target:  5'- -aCAGGCcGAGCGGCAaCGUGaucucugccuCCGCCg -3'
miRNA:   3'- caGUCCGcUUCGCUGUcGCGC----------GGCGG- -5'
24584 3' -60 NC_005264.1 + 132448 0.68 0.636447
Target:  5'- ---cGGCGc-GCGACcGC-CGCCGCCg -3'
miRNA:   3'- caguCCGCuuCGCUGuCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 131989 0.71 0.48158
Target:  5'- -aCAGGCc-GGUGGCGGUGgGCCGaCCg -3'
miRNA:   3'- caGUCCGcuUCGCUGUCGCgCGGC-GG- -5'
24584 3' -60 NC_005264.1 + 131970 0.66 0.743755
Target:  5'- aUCgAGaCGccGUugccuaccgGGCGGCGCGCCGCCg -3'
miRNA:   3'- cAG-UCcGCuuCG---------CUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 131221 0.71 0.48158
Target:  5'- --gAGGCauggucgcaGGGCGAU-GCGCGCCGCCu -3'
miRNA:   3'- cagUCCGc--------UUCGCUGuCGCGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.