miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 37549 1.12 0.000858
Target:  5'- cGUCAGGCGAAGCGACAGCGCGCCGCCg -3'
miRNA:   3'- -CAGUCCGCUUCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 154806 0.72 0.394413
Target:  5'- --gAGGCGGAGgGcGCGGUgGCGCCGUCg -3'
miRNA:   3'- cagUCCGCUUCgC-UGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 98550 0.71 0.463369
Target:  5'- --gAGGCauGGAcGCGaACAGUGCGCCGCa -3'
miRNA:   3'- cagUCCG--CUU-CGC-UGUCGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 156651 0.66 0.780602
Target:  5'- cGUCucgcacGGCcauGGCGAcCGGCGUGCC-CCa -3'
miRNA:   3'- -CAGu-----CCGcu-UCGCU-GUCGCGCGGcGG- -5'
24584 3' -60 NC_005264.1 + 95353 0.76 0.241918
Target:  5'- aUgGGGcCGAcgGGCGGC-GCGUGCCGCCa -3'
miRNA:   3'- cAgUCC-GCU--UCGCUGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 103076 0.75 0.271656
Target:  5'- aGUCccGCGAAGCGuccgcgucGCAGC-CGCCGCCc -3'
miRNA:   3'- -CAGucCGCUUCGC--------UGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 150808 0.75 0.297509
Target:  5'- -gCGGGCGcuucgccuaaGGGCGGCGGU-CGCCGCCg -3'
miRNA:   3'- caGUCCGC----------UUCGCUGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 119164 0.74 0.331726
Target:  5'- ---cGGCGGccgccuuaacgccGGCGcGCAGCGCGCCGaCCg -3'
miRNA:   3'- caguCCGCU-------------UCGC-UGUCGCGCGGC-GG- -5'
24584 3' -60 NC_005264.1 + 117421 0.73 0.362515
Target:  5'- aUCGGGgcuguCGcGGCGcGCAGgGCGCCGCCc -3'
miRNA:   3'- cAGUCC-----GCuUCGC-UGUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 121932 0.73 0.386269
Target:  5'- --aGGGCGAcGGCGAgAGCGacggaGUCGCCg -3'
miRNA:   3'- cagUCCGCU-UCGCUgUCGCg----CGGCGG- -5'
24584 3' -60 NC_005264.1 + 151400 0.73 0.370319
Target:  5'- uUCuGGCGAGGaugcCGGCGGCcgGCGuCCGCCg -3'
miRNA:   3'- cAGuCCGCUUC----GCUGUCG--CGC-GGCGG- -5'
24584 3' -60 NC_005264.1 + 22753 0.73 0.350267
Target:  5'- --uGGGCGAAGCGAUAGCggcgggcaaugagggGCGCgGCg -3'
miRNA:   3'- cagUCCGCUUCGCUGUCG---------------CGCGgCGg -5'
24584 3' -60 NC_005264.1 + 37788 0.83 0.092134
Target:  5'- cUCgAGGCGAgcGGCGGagaagaGGCGCGCCGCCg -3'
miRNA:   3'- cAG-UCCGCU--UCGCUg-----UCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 128894 0.73 0.378238
Target:  5'- aUCGGGCGcGGUccCGGCGCGCCacgGCCu -3'
miRNA:   3'- cAGUCCGCuUCGcuGUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 149863 0.81 0.120132
Target:  5'- -aCGGGCucgcgucgucgucGGCGGCGGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGcu-----------UCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 18049 0.74 0.339794
Target:  5'- ----cGCGAAGCGGCGGCGCcGCgaGCCa -3'
miRNA:   3'- cagucCGCUUCGCUGUCGCG-CGg-CGG- -5'
24584 3' -60 NC_005264.1 + 142693 0.73 0.386269
Target:  5'- cUUGGGCGc--CGGCGGCGCGCCacGCCu -3'
miRNA:   3'- cAGUCCGCuucGCUGUCGCGCGG--CGG- -5'
24584 3' -60 NC_005264.1 + 75088 0.72 0.419497
Target:  5'- uUCGcGGCGcuGCGGCAG-GCGCCGgCg -3'
miRNA:   3'- cAGU-CCGCuuCGCUGUCgCGCGGCgG- -5'
24584 3' -60 NC_005264.1 + 157013 0.79 0.152819
Target:  5'- -cCAGGCG-AGUGGCGGCcacCGCCGCCg -3'
miRNA:   3'- caGUCCGCuUCGCUGUCGc--GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 150631 0.75 0.271656
Target:  5'- cUCuGGCGAGGCGGC-GCGCaUCGCCc -3'
miRNA:   3'- cAGuCCGCUUCGCUGuCGCGcGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.