Results 21 - 40 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24584 | 3' | -60 | NC_005264.1 | + | 155772 | 0.71 | 0.490816 |
Target: 5'- -gCAGcGCGAcGGCGcCGGCcgGCGCCGUCg -3' miRNA: 3'- caGUC-CGCU-UCGCuGUCG--CGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 98550 | 0.71 | 0.463369 |
Target: 5'- --gAGGCauGGAcGCGaACAGUGCGCCGCa -3' miRNA: 3'- cagUCCG--CUU-CGC-UGUCGCGCGGCGg -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 22753 | 0.73 | 0.350267 |
Target: 5'- --uGGGCGAAGCGAUAGCggcgggcaaugagggGCGCgGCg -3' miRNA: 3'- cagUCCGCUUCGCUGUCG---------------CGCGgCGg -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 157013 | 0.79 | 0.152819 |
Target: 5'- -cCAGGCG-AGUGGCGGCcacCGCCGCCg -3' miRNA: 3'- caGUCCGCuUCGCUGUCGc--GCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 123697 | 0.7 | 0.518993 |
Target: 5'- aUCAGGgaauaccugcguCGggGCGAguG-GCGCCGCg -3' miRNA: 3'- cAGUCC------------GCuuCGCUguCgCGCGGCGg -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 156690 | 0.7 | 0.500132 |
Target: 5'- -gCAcGCGAugcGCGACgGGCGCGCgGCCc -3' miRNA: 3'- caGUcCGCUu--CGCUG-UCGCGCGgCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 154806 | 0.72 | 0.394413 |
Target: 5'- --gAGGCGGAGgGcGCGGUgGCGCCGUCg -3' miRNA: 3'- cagUCCGCUUCgC-UGUCG-CGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 149863 | 0.81 | 0.120132 |
Target: 5'- -aCGGGCucgcgucgucgucGGCGGCGGCGCGCCGCCc -3' miRNA: 3'- caGUCCGcu-----------UCGCUGUCGCGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 125491 | 0.7 | 0.500132 |
Target: 5'- cUC-GGCGgcGCGGCgaacgucggGGUGCGCgGCCa -3' miRNA: 3'- cAGuCCGCuuCGCUG---------UCGCGCGgCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 37788 | 0.83 | 0.092134 |
Target: 5'- cUCgAGGCGAgcGGCGGagaagaGGCGCGCCGCCg -3' miRNA: 3'- cAG-UCCGCU--UCGCUg-----UCGCGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 75088 | 0.72 | 0.419497 |
Target: 5'- uUCGcGGCGcuGCGGCAG-GCGCCGgCg -3' miRNA: 3'- cAGU-CCGCuuCGCUGUCgCGCGGCgG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 76735 | 0.71 | 0.490816 |
Target: 5'- cGUauuGGgGAAGCGugGGUGCGaacuCGCCg -3' miRNA: 3'- -CAgu-CCgCUUCGCugUCGCGCg---GCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 128894 | 0.73 | 0.378238 |
Target: 5'- aUCGGGCGcGGUccCGGCGCGCCacgGCCu -3' miRNA: 3'- cAGUCCGCuUCGcuGUCGCGCGG---CGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 117421 | 0.73 | 0.362515 |
Target: 5'- aUCGGGgcuguCGcGGCGcGCAGgGCGCCGCCc -3' miRNA: 3'- cAGUCC-----GCuUCGC-UGUCgCGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 150808 | 0.75 | 0.297509 |
Target: 5'- -gCGGGCGcuucgccuaaGGGCGGCGGU-CGCCGCCg -3' miRNA: 3'- caGUCCGC----------UUCGCUGUCGcGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 95353 | 0.76 | 0.241918 |
Target: 5'- aUgGGGcCGAcgGGCGGC-GCGUGCCGCCa -3' miRNA: 3'- cAgUCC-GCU--UCGCUGuCGCGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 66548 | 0.7 | 0.537166 |
Target: 5'- -gCGGGCGucGGCGAUuuccacaAGCucCGCCGCCa -3' miRNA: 3'- caGUCCGCu-UCGCUG-------UCGc-GCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 158478 | 0.7 | 0.524707 |
Target: 5'- --gGGGCGGuggaaagcaugcuGCGACGcGCGCucaGCCGCCa -3' miRNA: 3'- cagUCCGCUu------------CGCUGU-CGCG---CGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 158844 | 0.7 | 0.509526 |
Target: 5'- --uGGGCGAGGaGGCA-UGUGCCGCCc -3' miRNA: 3'- cagUCCGCUUCgCUGUcGCGCGGCGG- -5' |
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24584 | 3' | -60 | NC_005264.1 | + | 23991 | 0.7 | 0.509526 |
Target: 5'- --aAGGgGAGGUGGaugaGGCGgGCCGCUg -3' miRNA: 3'- cagUCCgCUUCGCUg---UCGCgCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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