miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 6628 0.7 0.516146
Target:  5'- -gCAGGUGAAGUuggaccugcgccccGACauauAGCcgGCGCCGCCa -3'
miRNA:   3'- caGUCCGCUUCG--------------CUG----UCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 154806 0.72 0.394413
Target:  5'- --gAGGCGGAGgGcGCGGUgGCGCCGUCg -3'
miRNA:   3'- cagUCCGCUUCgC-UGUCG-CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 149863 0.81 0.120132
Target:  5'- -aCGGGCucgcgucgucgucGGCGGCGGCGCGCCGCCc -3'
miRNA:   3'- caGUCCGcu-----------UCGCUGUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 126086 0.7 0.509526
Target:  5'- ---cGGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caguCCGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 37788 0.83 0.092134
Target:  5'- cUCgAGGCGAgcGGCGGagaagaGGCGCGCCGCCg -3'
miRNA:   3'- cAG-UCCGCU--UCGCUg-----UCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 154519 0.69 0.596781
Target:  5'- -cUAGGgGA--CGACGGCGaCGCCGCg -3'
miRNA:   3'- caGUCCgCUucGCUGUCGC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 95353 0.76 0.241918
Target:  5'- aUgGGGcCGAcgGGCGGC-GCGUGCCGCCa -3'
miRNA:   3'- cAgUCC-GCU--UCGCUGuCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 145930 0.69 0.594804
Target:  5'- gGUCAGcGCGGGcaugggccucaccGaCGACGGCGacauaucguuugcCGCCGCCg -3'
miRNA:   3'- -CAGUC-CGCUU-------------C-GCUGUCGC-------------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 159192 0.69 0.576085
Target:  5'- cGUCGagacGGCGGccaucGCGACgaaugucAGCGCGCCcGCCc -3'
miRNA:   3'- -CAGU----CCGCUu----CGCUG-------UCGCGCGG-CGG- -5'
24584 3' -60 NC_005264.1 + 159779 0.69 0.5614
Target:  5'- aGUCGcGGCGAgacAGCGugccaguuaggagacGCAGCgGCGCUGCa -3'
miRNA:   3'- -CAGU-CCGCU---UCGC---------------UGUCG-CGCGGCGg -5'
24584 3' -60 NC_005264.1 + 159995 0.7 0.547788
Target:  5'- -gCGGGCGAcGGCGcgAGCGCGaccggcccuCCGCCa -3'
miRNA:   3'- caGUCCGCU-UCGCugUCGCGC---------GGCGG- -5'
24584 3' -60 NC_005264.1 + 66548 0.7 0.537166
Target:  5'- -gCGGGCGucGGCGAUuuccacaAGCucCGCCGCCa -3'
miRNA:   3'- caGUCCGCu-UCGCUG-------UCGc-GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 158478 0.7 0.524707
Target:  5'- --gGGGCGGuggaaagcaugcuGCGACGcGCGCucaGCCGCCa -3'
miRNA:   3'- cagUCCGCUu------------CGCUGU-CGCG---CGGCGG- -5'
24584 3' -60 NC_005264.1 + 84152 0.7 0.509526
Target:  5'- ---cGG-GAAGUGgucGCAGCGCGCgCGCCg -3'
miRNA:   3'- caguCCgCUUCGC---UGUCGCGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 125491 0.7 0.500132
Target:  5'- cUC-GGCGgcGCGGCgaacgucggGGUGCGCgGCCa -3'
miRNA:   3'- cAGuCCGCuuCGCUG---------UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 155772 0.71 0.490816
Target:  5'- -gCAGcGCGAcGGCGcCGGCcgGCGCCGUCg -3'
miRNA:   3'- caGUC-CGCU-UCGCuGUCG--CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 98550 0.71 0.463369
Target:  5'- --gAGGCauGGAcGCGaACAGUGCGCCGCa -3'
miRNA:   3'- cagUCCG--CUU-CGC-UGUCGCGCGGCGg -5'
24584 3' -60 NC_005264.1 + 128894 0.73 0.378238
Target:  5'- aUCGGGCGcGGUccCGGCGCGCCacgGCCu -3'
miRNA:   3'- cAGUCCGCuUCGcuGUCGCGCGG---CGG- -5'
24584 3' -60 NC_005264.1 + 117421 0.73 0.362515
Target:  5'- aUCGGGgcuguCGcGGCGcGCAGgGCGCCGCCc -3'
miRNA:   3'- cAGUCC-----GCuUCGC-UGUCgCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 150808 0.75 0.297509
Target:  5'- -gCGGGCGcuucgccuaaGGGCGGCGGU-CGCCGCCg -3'
miRNA:   3'- caGUCCGC----------UUCGCUGUCGcGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.