miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24584 3' -60 NC_005264.1 + 158478 0.7 0.524707
Target:  5'- --gGGGCGGuggaaagcaugcuGCGACGcGCGCucaGCCGCCa -3'
miRNA:   3'- cagUCCGCUu------------CGCUGU-CGCG---CGGCGG- -5'
24584 3' -60 NC_005264.1 + 56301 0.7 0.54682
Target:  5'- uUCucGCGAAaaacuccGCGGCcGCGCuGCCGCCg -3'
miRNA:   3'- cAGucCGCUU-------CGCUGuCGCG-CGGCGG- -5'
24584 3' -60 NC_005264.1 + 103076 0.75 0.271656
Target:  5'- aGUCccGCGAAGCGuccgcgucGCAGC-CGCCGCCc -3'
miRNA:   3'- -CAGucCGCUUCGC--------UGUCGcGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 119164 0.74 0.331726
Target:  5'- ---cGGCGGccgccuuaacgccGGCGcGCAGCGCGCCGaCCg -3'
miRNA:   3'- caguCCGCU-------------UCGC-UGUCGCGCGGC-GG- -5'
24584 3' -60 NC_005264.1 + 67513 0.73 0.370319
Target:  5'- uUCGcGGCGcccGGCGGCGGCaaucuccauGCGCUGCCg -3'
miRNA:   3'- cAGU-CCGCu--UCGCUGUCG---------CGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 142693 0.73 0.386269
Target:  5'- cUUGGGCGc--CGGCGGCGCGCCacGCCu -3'
miRNA:   3'- cAGUCCGCuucGCUGUCGCGCGG--CGG- -5'
24584 3' -60 NC_005264.1 + 72359 0.71 0.466983
Target:  5'- uUCgAGGCGAacGGgacuuggacuuuguuUGACGGcCGCGCCGCCc -3'
miRNA:   3'- cAG-UCCGCU--UC---------------GCUGUC-GCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 76735 0.71 0.490816
Target:  5'- cGUauuGGgGAAGCGugGGUGCGaacuCGCCg -3'
miRNA:   3'- -CAgu-CCgCUUCGCugUCGCGCg---GCGG- -5'
24584 3' -60 NC_005264.1 + 156690 0.7 0.500132
Target:  5'- -gCAcGCGAugcGCGACgGGCGCGCgGCCc -3'
miRNA:   3'- caGUcCGCUu--CGCUG-UCGCGCGgCGG- -5'
24584 3' -60 NC_005264.1 + 126796 0.7 0.509526
Target:  5'- aGUCGGGCacuGAGCGAgGGgGCGCUGg- -3'
miRNA:   3'- -CAGUCCGc--UUCGCUgUCgCGCGGCgg -5'
24584 3' -60 NC_005264.1 + 137210 0.68 0.666187
Target:  5'- ----cGCGGAGCG-CGGCcccacCGCCGCCg -3'
miRNA:   3'- cagucCGCUUCGCuGUCGc----GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 155316 0.68 0.643396
Target:  5'- -gUAGGCGAGGaGAgGGCGgacgucgucgcuauCGCUGCCg -3'
miRNA:   3'- caGUCCGCUUCgCUgUCGC--------------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 131036 0.7 0.547788
Target:  5'- cGUCA--CGAccuGCGGCGGCGacCGCCGCCc -3'
miRNA:   3'- -CAGUccGCUu--CGCUGUCGC--GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 125841 0.69 0.567263
Target:  5'- gGUCAGGguguugccgGAGGCGGCGGCGacuauGgCGCCa -3'
miRNA:   3'- -CAGUCCg--------CUUCGCUGUCGCg----CgGCGG- -5'
24584 3' -60 NC_005264.1 + 145930 0.69 0.594804
Target:  5'- gGUCAGcGCGGGcaugggccucaccGaCGACGGCGacauaucguuugcCGCCGCCg -3'
miRNA:   3'- -CAGUC-CGCUU-------------C-GCUGUCGC-------------GCGGCGG- -5'
24584 3' -60 NC_005264.1 + 154519 0.69 0.596781
Target:  5'- -cUAGGgGA--CGACGGCGaCGCCGCg -3'
miRNA:   3'- caGUCCgCUucGCUGUCGC-GCGGCGg -5'
24584 3' -60 NC_005264.1 + 61077 0.68 0.613616
Target:  5'- uUCAGG-GccGCcaccacguccuuugGGgAGCGCGCCGCCa -3'
miRNA:   3'- cAGUCCgCuuCG--------------CUgUCGCGCGGCGG- -5'
24584 3' -60 NC_005264.1 + 47082 0.68 0.616592
Target:  5'- --aAGGCGAgaaguggcacGGCGAgAGUauaGCGCuCGCCg -3'
miRNA:   3'- cagUCCGCU----------UCGCUgUCG---CGCG-GCGG- -5'
24584 3' -60 NC_005264.1 + 21985 0.68 0.626517
Target:  5'- aGUCGgccuGGCGcAAGCGAaaGGCGCGgCGCg -3'
miRNA:   3'- -CAGU----CCGC-UUCGCUg-UCGCGCgGCGg -5'
24584 3' -60 NC_005264.1 + 162176 0.68 0.626517
Target:  5'- -aCGGGUGGAGCGgggaggggGgGGCGCGUgaGCCu -3'
miRNA:   3'- caGUCCGCUUCGC--------UgUCGCGCGg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.