miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24585 3' -51.3 NC_005264.1 + 4256 0.66 0.996089
Target:  5'- aGUCCCGGcuuGCCGcgCGGGAaccGcgGGg -3'
miRNA:   3'- cUAGGGCCuu-UGGCa-GCUCUa--CuaCC- -5'
24585 3' -51.3 NC_005264.1 + 123283 0.66 0.996089
Target:  5'- aGUCCCGGcuuGCCGcgCGGGAaccGcgGGg -3'
miRNA:   3'- cUAGGGCCuu-UGGCa-GCUCUa--CuaCC- -5'
24585 3' -51.3 NC_005264.1 + 18502 0.66 0.9947
Target:  5'- aGAUgUCGcc-GCUGUCGAGcAUGGUGGg -3'
miRNA:   3'- -CUAgGGCcuuUGGCAGCUC-UACUACC- -5'
24585 3' -51.3 NC_005264.1 + 108145 0.66 0.992935
Target:  5'- --aUCgGGggGCCGUCGAGccucGcgGGg -3'
miRNA:   3'- cuaGGgCCuuUGGCAGCUCua--CuaCC- -5'
24585 3' -51.3 NC_005264.1 + 153478 0.67 0.991892
Target:  5'- uGUCCCGGGG--CGUUGgAGGUGGUcGGg -3'
miRNA:   3'- cUAGGGCCUUugGCAGC-UCUACUA-CC- -5'
24585 3' -51.3 NC_005264.1 + 34451 0.67 0.991892
Target:  5'- uGUCCCGGGG--CGUUGgAGGUGGUcGGg -3'
miRNA:   3'- cUAGGGCCUUugGCAGC-UCUACUA-CC- -5'
24585 3' -51.3 NC_005264.1 + 21503 0.67 0.988017
Target:  5'- cGAUCCCaGAGGgUGUCGAGAguauacgcUGGg -3'
miRNA:   3'- -CUAGGGcCUUUgGCAGCUCUacu-----ACC- -5'
24585 3' -51.3 NC_005264.1 + 38312 0.67 0.988017
Target:  5'- -uUCgCGGAGGCCGaCGAGGguUGgcGGg -3'
miRNA:   3'- cuAGgGCCUUUGGCaGCUCU--ACuaCC- -5'
24585 3' -51.3 NC_005264.1 + 157339 0.67 0.988017
Target:  5'- -uUCgCGGAGGCCGaCGAGGguUGgcGGg -3'
miRNA:   3'- cuAGgGCCUUUGGCaGCUCU--ACuaCC- -5'
24585 3' -51.3 NC_005264.1 + 124147 0.67 0.986449
Target:  5'- uGGUgCCGGAAagguGCUGggcaaCGuGGUGAUGGg -3'
miRNA:   3'- -CUAgGGCCUU----UGGCa----GCuCUACUACC- -5'
24585 3' -51.3 NC_005264.1 + 94562 0.68 0.982844
Target:  5'- -cUCuCCGGAAagaauACCGUCGGuGGUucGAUGGc -3'
miRNA:   3'- cuAG-GGCCUU-----UGGCAGCU-CUA--CUACC- -5'
24585 3' -51.3 NC_005264.1 + 31524 0.68 0.975889
Target:  5'- --gCUCGGGcggggagGGCCGUUGGGGUGggGGc -3'
miRNA:   3'- cuaGGGCCU-------UUGGCAGCUCUACuaCC- -5'
24585 3' -51.3 NC_005264.1 + 150551 0.68 0.975889
Target:  5'- --gCUCGGGcggggagGGCCGUUGGGGUGggGGc -3'
miRNA:   3'- cuaGGGCCU-------UUGGCAGCUCUACuaCC- -5'
24585 3' -51.3 NC_005264.1 + 35015 0.69 0.973529
Target:  5'- --gCCgCGGAGgcaacGCUGUCGGGA-GAUGGc -3'
miRNA:   3'- cuaGG-GCCUU-----UGGCAGCUCUaCUACC- -5'
24585 3' -51.3 NC_005264.1 + 100586 0.69 0.967696
Target:  5'- cGUCUCGGAAACCGUCGccaaGGAUa---- -3'
miRNA:   3'- cUAGGGCCUUUGGCAGC----UCUAcuacc -5'
24585 3' -51.3 NC_005264.1 + 131914 0.69 0.961005
Target:  5'- --aCCCGGAcgGACCGUCGAGccGcccGGc -3'
miRNA:   3'- cuaGGGCCU--UUGGCAGCUCuaCua-CC- -5'
24585 3' -51.3 NC_005264.1 + 12888 0.69 0.961005
Target:  5'- --aCCCGGAcgGACCGUCGAGccGcccGGc -3'
miRNA:   3'- cuaGGGCCU--UUGGCAGCUCuaCua-CC- -5'
24585 3' -51.3 NC_005264.1 + 98018 0.7 0.950952
Target:  5'- -uUCUCGGAAACCGUCGuGAgcccugcgcuuccggUGcccAUGGg -3'
miRNA:   3'- cuAGGGCCUUUGGCAGCuCU---------------AC---UACC- -5'
24585 3' -51.3 NC_005264.1 + 44854 0.7 0.949265
Target:  5'- --gUCCGGguGCCGUCGAGA-GAucugcagccUGGg -3'
miRNA:   3'- cuaGGGCCuuUGGCAGCUCUaCU---------ACC- -5'
24585 3' -51.3 NC_005264.1 + 30087 0.71 0.93027
Target:  5'- cGcgCCCGGAcagAAUCGcgagUCGAGAUGcgGGc -3'
miRNA:   3'- -CuaGGGCCU---UUGGC----AGCUCUACuaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.