Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 4256 | 0.66 | 0.996089 |
Target: 5'- aGUCCCGGcuuGCCGcgCGGGAaccGcgGGg -3' miRNA: 3'- cUAGGGCCuu-UGGCa-GCUCUa--CuaCC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 12888 | 0.69 | 0.961005 |
Target: 5'- --aCCCGGAcgGACCGUCGAGccGcccGGc -3' miRNA: 3'- cuaGGGCCU--UUGGCAGCUCuaCua-CC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 18502 | 0.66 | 0.9947 |
Target: 5'- aGAUgUCGcc-GCUGUCGAGcAUGGUGGg -3' miRNA: 3'- -CUAgGGCcuuUGGCAGCUC-UACUACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 21503 | 0.67 | 0.988017 |
Target: 5'- cGAUCCCaGAGGgUGUCGAGAguauacgcUGGg -3' miRNA: 3'- -CUAGGGcCUUUgGCAGCUCUacu-----ACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 30087 | 0.71 | 0.93027 |
Target: 5'- cGcgCCCGGAcagAAUCGcgagUCGAGAUGcgGGc -3' miRNA: 3'- -CuaGGGCCU---UUGGC----AGCUCUACuaCC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 31524 | 0.68 | 0.975889 |
Target: 5'- --gCUCGGGcggggagGGCCGUUGGGGUGggGGc -3' miRNA: 3'- cuaGGGCCU-------UUGGCAGCUCUACuaCC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 34451 | 0.67 | 0.991892 |
Target: 5'- uGUCCCGGGG--CGUUGgAGGUGGUcGGg -3' miRNA: 3'- cUAGGGCCUUugGCAGC-UCUACUA-CC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 35015 | 0.69 | 0.973529 |
Target: 5'- --gCCgCGGAGgcaacGCUGUCGGGA-GAUGGc -3' miRNA: 3'- cuaGG-GCCUU-----UGGCAGCUCUaCUACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 38312 | 0.67 | 0.988017 |
Target: 5'- -uUCgCGGAGGCCGaCGAGGguUGgcGGg -3' miRNA: 3'- cuAGgGCCUUUGGCaGCUCU--ACuaCC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 38644 | 1.1 | 0.008416 |
Target: 5'- aGAUCCCGGAAACCGUCGAGAUGAUGGc -3' miRNA: 3'- -CUAGGGCCUUUGGCAGCUCUACUACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 44854 | 0.7 | 0.949265 |
Target: 5'- --gUCCGGguGCCGUCGAGA-GAucugcagccUGGg -3' miRNA: 3'- cuaGGGCCuuUGGCAGCUCUaCU---------ACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 94562 | 0.68 | 0.982844 |
Target: 5'- -cUCuCCGGAAagaauACCGUCGGuGGUucGAUGGc -3' miRNA: 3'- cuAG-GGCCUU-----UGGCAGCU-CUA--CUACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 98018 | 0.7 | 0.950952 |
Target: 5'- -uUCUCGGAAACCGUCGuGAgcccugcgcuuccggUGcccAUGGg -3' miRNA: 3'- cuAGGGCCUUUGGCAGCuCU---------------AC---UACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 100586 | 0.69 | 0.967696 |
Target: 5'- cGUCUCGGAAACCGUCGccaaGGAUa---- -3' miRNA: 3'- cUAGGGCCUUUGGCAGC----UCUAcuacc -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 108145 | 0.66 | 0.992935 |
Target: 5'- --aUCgGGggGCCGUCGAGccucGcgGGg -3' miRNA: 3'- cuaGGgCCuuUGGCAGCUCua--CuaCC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 123283 | 0.66 | 0.996089 |
Target: 5'- aGUCCCGGcuuGCCGcgCGGGAaccGcgGGg -3' miRNA: 3'- cUAGGGCCuu-UGGCa-GCUCUa--CuaCC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 124147 | 0.67 | 0.986449 |
Target: 5'- uGGUgCCGGAAagguGCUGggcaaCGuGGUGAUGGg -3' miRNA: 3'- -CUAgGGCCUU----UGGCa----GCuCUACUACC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 131914 | 0.69 | 0.961005 |
Target: 5'- --aCCCGGAcgGACCGUCGAGccGcccGGc -3' miRNA: 3'- cuaGGGCCU--UUGGCAGCUCuaCua-CC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 150551 | 0.68 | 0.975889 |
Target: 5'- --gCUCGGGcggggagGGCCGUUGGGGUGggGGc -3' miRNA: 3'- cuaGGGCCU-------UUGGCAGCUCUACuaCC- -5' |
|||||||
24585 | 3' | -51.3 | NC_005264.1 | + | 153478 | 0.67 | 0.991892 |
Target: 5'- uGUCCCGGGG--CGUUGgAGGUGGUcGGg -3' miRNA: 3'- cUAGGGCCUUugGCAGC-UCUACUA-CC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home