miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24586 3' -55.7 NC_005264.1 + 114668 0.66 0.94406
Target:  5'- cUCCaugaaGCGGGgGUGCAgccaCGCCGAgcAGGa -3'
miRNA:   3'- -AGGag---CGCCCaCAUGUg---GCGGUU--UCC- -5'
24586 3' -55.7 NC_005264.1 + 126932 0.66 0.94406
Target:  5'- cUCCUCGCcggaguacuggGGGgacGUaACGCUGCCGcgagacgagccgGAGGg -3'
miRNA:   3'- -AGGAGCG-----------CCCa--CA-UGUGGCGGU------------UUCC- -5'
24586 3' -55.7 NC_005264.1 + 7906 0.66 0.94406
Target:  5'- cUCCUCGCcggaguacuggGGGgacGUaACGCUGCCGcgagacgagccgGAGGg -3'
miRNA:   3'- -AGGAGCG-----------CCCa--CA-UGUGGCGGU------------UUCC- -5'
24586 3' -55.7 NC_005264.1 + 10520 0.66 0.934731
Target:  5'- gCCgaGCGGGUccuGUgcgGCGCCGCCcucAGGGg -3'
miRNA:   3'- aGGagCGCCCA---CA---UGUGGCGGu--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 129547 0.66 0.934731
Target:  5'- gCCgaGCGGGUccuGUgcgGCGCCGCCcucAGGGg -3'
miRNA:   3'- aGGagCGCCCA---CA---UGUGGCGGu--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 3394 0.66 0.929718
Target:  5'- cUCCggaaCGCGGGgucgGUGCGCgGggGAGGGa -3'
miRNA:   3'- -AGGa---GCGCCCa---CAUGUGgCggUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 6564 0.66 0.929718
Target:  5'- gCCUCGUccacGGUGaUGCGCCccCCAGGGGc -3'
miRNA:   3'- aGGAGCGc---CCAC-AUGUGGc-GGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 125591 0.66 0.929718
Target:  5'- gCCUCGUccacGGUGaUGCGCCccCCAGGGGc -3'
miRNA:   3'- aGGAGCGc---CCAC-AUGUGGc-GGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 122421 0.66 0.929718
Target:  5'- cUCCggaaCGCGGGgucgGUGCGCgGggGAGGGa -3'
miRNA:   3'- -AGGa---GCGCCCa---CAUGUGgCggUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 161146 0.66 0.924472
Target:  5'- aCCUgGCaGGGUGUGCgcugagACCGCaCGAGa- -3'
miRNA:   3'- aGGAgCG-CCCACAUG------UGGCG-GUUUcc -5'
24586 3' -55.7 NC_005264.1 + 42119 0.66 0.924472
Target:  5'- aCCUgGCaGGGUGUGCgcugagACCGCaCGAGa- -3'
miRNA:   3'- aGGAgCG-CCCACAUG------UGGCG-GUUUcc -5'
24586 3' -55.7 NC_005264.1 + 78647 0.66 0.924472
Target:  5'- cUCCUCGCuccaGcUGUACGCCGCaGAAGu -3'
miRNA:   3'- -AGGAGCGc---CcACAUGUGGCGgUUUCc -5'
24586 3' -55.7 NC_005264.1 + 87094 0.66 0.923935
Target:  5'- gCCUCGCGGGUaacGCACCcagacugGCCuccGGc -3'
miRNA:   3'- aGGAGCGCCCAca-UGUGG-------CGGuuuCC- -5'
24586 3' -55.7 NC_005264.1 + 132766 0.66 0.918993
Target:  5'- gUCCgggCGCGGcg--GCGCCGaCGAGGGg -3'
miRNA:   3'- -AGGa--GCGCCcacaUGUGGCgGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 11062 0.66 0.918993
Target:  5'- gCCUgGCGGGgcaaGUAC-CCGCCu---- -3'
miRNA:   3'- aGGAgCGCCCa---CAUGuGGCGGuuucc -5'
24586 3' -55.7 NC_005264.1 + 133733 0.66 0.918993
Target:  5'- gCCUCGgGGGguucgaggacgUGUucgucauucGCACCGCCGAc-- -3'
miRNA:   3'- aGGAGCgCCC-----------ACA---------UGUGGCGGUUucc -5'
24586 3' -55.7 NC_005264.1 + 151881 0.66 0.918432
Target:  5'- gUCUUCGCGGGcaucagcUGUAUGUgGCgGAGGGg -3'
miRNA:   3'- -AGGAGCGCCC-------ACAUGUGgCGgUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 12911 0.67 0.91328
Target:  5'- gCCUUGCGauGGUGUGCGUgGCCAucguGGc -3'
miRNA:   3'- aGGAGCGC--CCACAUGUGgCGGUuu--CC- -5'
24586 3' -55.7 NC_005264.1 + 129423 0.67 0.91328
Target:  5'- aUUCUCGCGGGcGUAC-UCGCCc---- -3'
miRNA:   3'- -AGGAGCGCCCaCAUGuGGCGGuuucc -5'
24586 3' -55.7 NC_005264.1 + 102739 0.67 0.907337
Target:  5'- --gUCGCGGcGuUGUGgGCCGCCGGcaguAGGc -3'
miRNA:   3'- aggAGCGCC-C-ACAUgUGGCGGUU----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.