miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24586 3' -55.7 NC_005264.1 + 119900 0.67 0.901791
Target:  5'- gCCgCGCccggacguacgacuGGGUGUACggccccgugucgcggGCCGCUggGGGg -3'
miRNA:   3'- aGGaGCG--------------CCCACAUG---------------UGGCGGuuUCC- -5'
24586 3' -55.7 NC_005264.1 + 874 0.67 0.901791
Target:  5'- gCCgCGCccggacguacgacuGGGUGUACggccccgugucgcggGCCGCUggGGGg -3'
miRNA:   3'- aGGaGCG--------------CCCACAUG---------------UGGCGGuuUCC- -5'
24586 3' -55.7 NC_005264.1 + 81222 0.67 0.88814
Target:  5'- uUCgUCGCGacuUGgACACCGCCuAAGGg -3'
miRNA:   3'- -AGgAGCGCcc-ACaUGUGGCGGuUUCC- -5'
24586 3' -55.7 NC_005264.1 + 3924 0.68 0.881295
Target:  5'- uUUCUCa-GGGUGgcCGCCGUCAagAAGGg -3'
miRNA:   3'- -AGGAGcgCCCACauGUGGCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 122950 0.68 0.881295
Target:  5'- uUUCUCa-GGGUGgcCGCCGUCAagAAGGg -3'
miRNA:   3'- -AGGAGcgCCCACauGUGGCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 81404 0.68 0.874235
Target:  5'- ---aUGCGGGUGcGCGCCGCUu--GGu -3'
miRNA:   3'- aggaGCGCCCACaUGUGGCGGuuuCC- -5'
24586 3' -55.7 NC_005264.1 + 34632 0.68 0.859484
Target:  5'- gCC-CGCgGGGUGUuCGCgGCCAccGGu -3'
miRNA:   3'- aGGaGCG-CCCACAuGUGgCGGUuuCC- -5'
24586 3' -55.7 NC_005264.1 + 64160 0.68 0.859484
Target:  5'- aUCCg-GCcGGUGUgcaaGCGCCGCCAGcacuGGGu -3'
miRNA:   3'- -AGGagCGcCCACA----UGUGGCGGUU----UCC- -5'
24586 3' -55.7 NC_005264.1 + 3267 0.68 0.851806
Target:  5'- cUUCUCgGUGGGUGggcauuCAgCGCCAGAGu -3'
miRNA:   3'- -AGGAG-CGCCCACau----GUgGCGGUUUCc -5'
24586 3' -55.7 NC_005264.1 + 125488 0.68 0.847105
Target:  5'- cUCCUcggcggcgcggcgaaCGuCGGG-GUGCGCgGCCAucGAGGg -3'
miRNA:   3'- -AGGA---------------GC-GCCCaCAUGUGgCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 5364 0.68 0.847105
Target:  5'- gCCUCGCGGaUGauucACACCggcgcucgauugcuuGCCAGGGGc -3'
miRNA:   3'- aGGAGCGCCcACa---UGUGG---------------CGGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 124391 0.68 0.847105
Target:  5'- gCCUCGCGGaUGauucACACCggcgcucgauugcuuGCCAGGGGc -3'
miRNA:   3'- aGGAGCGCCcACa---UGUGG---------------CGGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 6461 0.68 0.847105
Target:  5'- cUCCUcggcggcgcggcgaaCGuCGGG-GUGCGCgGCCAucGAGGg -3'
miRNA:   3'- -AGGA---------------GC-GCCCaCAUGUGgCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 38024 0.68 0.843933
Target:  5'- gCCUUGUuacuGGGUuaGUGCGCCGCUugucagugGAAGGc -3'
miRNA:   3'- aGGAGCG----CCCA--CAUGUGGCGG--------UUUCC- -5'
24586 3' -55.7 NC_005264.1 + 91280 0.69 0.835872
Target:  5'- gUCCUgaUGCGGaUGUGCAcgagcuCCGCCAGcAGGc -3'
miRNA:   3'- -AGGA--GCGCCcACAUGU------GGCGGUU-UCC- -5'
24586 3' -55.7 NC_005264.1 + 125283 0.7 0.765523
Target:  5'- cUCCgUCGCGGucGU-CGCCGCCGucGGg -3'
miRNA:   3'- -AGG-AGCGCCcaCAuGUGGCGGUuuCC- -5'
24586 3' -55.7 NC_005264.1 + 6256 0.7 0.765523
Target:  5'- cUCCgUCGCGGucGU-CGCCGCCGucGGg -3'
miRNA:   3'- -AGG-AGCGCCcaCAuGUGGCGGUuuCC- -5'
24586 3' -55.7 NC_005264.1 + 16450 0.71 0.686797
Target:  5'- gCC-CGCGGGUGUGaacguggucgaacCAgCGCUggGGGg -3'
miRNA:   3'- aGGaGCGCCCACAU-------------GUgGCGGuuUCC- -5'
24586 3' -55.7 NC_005264.1 + 150736 0.73 0.62735
Target:  5'- uUUCUCGCGGGggUGUGCA-CGCCAGGc- -3'
miRNA:   3'- -AGGAGCGCCC--ACAUGUgGCGGUUUcc -5'
24586 3' -55.7 NC_005264.1 + 150712 0.73 0.576992
Target:  5'- cUCUCgGCGGGgcUGC-CCGCCAAAGGu -3'
miRNA:   3'- aGGAG-CGCCCacAUGuGGCGGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.