miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24586 3' -55.7 NC_005264.1 + 874 0.67 0.901791
Target:  5'- gCCgCGCccggacguacgacuGGGUGUACggccccgugucgcggGCCGCUggGGGg -3'
miRNA:   3'- aGGaGCG--------------CCCACAUG---------------UGGCGGuuUCC- -5'
24586 3' -55.7 NC_005264.1 + 3267 0.68 0.851806
Target:  5'- cUUCUCgGUGGGUGggcauuCAgCGCCAGAGu -3'
miRNA:   3'- -AGGAG-CGCCCACau----GUgGCGGUUUCc -5'
24586 3' -55.7 NC_005264.1 + 3394 0.66 0.929718
Target:  5'- cUCCggaaCGCGGGgucgGUGCGCgGggGAGGGa -3'
miRNA:   3'- -AGGa---GCGCCCa---CAUGUGgCggUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 3924 0.68 0.881295
Target:  5'- uUUCUCa-GGGUGgcCGCCGUCAagAAGGg -3'
miRNA:   3'- -AGGAGcgCCCACauGUGGCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 5364 0.68 0.847105
Target:  5'- gCCUCGCGGaUGauucACACCggcgcucgauugcuuGCCAGGGGc -3'
miRNA:   3'- aGGAGCGCCcACa---UGUGG---------------CGGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 6256 0.7 0.765523
Target:  5'- cUCCgUCGCGGucGU-CGCCGCCGucGGg -3'
miRNA:   3'- -AGG-AGCGCCcaCAuGUGGCGGUuuCC- -5'
24586 3' -55.7 NC_005264.1 + 6461 0.68 0.847105
Target:  5'- cUCCUcggcggcgcggcgaaCGuCGGG-GUGCGCgGCCAucGAGGg -3'
miRNA:   3'- -AGGA---------------GC-GCCCaCAUGUGgCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 6564 0.66 0.929718
Target:  5'- gCCUCGUccacGGUGaUGCGCCccCCAGGGGc -3'
miRNA:   3'- aGGAGCGc---CCAC-AUGUGGc-GGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 7906 0.66 0.94406
Target:  5'- cUCCUCGCcggaguacuggGGGgacGUaACGCUGCCGcgagacgagccgGAGGg -3'
miRNA:   3'- -AGGAGCG-----------CCCa--CA-UGUGGCGGU------------UUCC- -5'
24586 3' -55.7 NC_005264.1 + 10520 0.66 0.934731
Target:  5'- gCCgaGCGGGUccuGUgcgGCGCCGCCcucAGGGg -3'
miRNA:   3'- aGGagCGCCCA---CA---UGUGGCGGu--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 11062 0.66 0.918993
Target:  5'- gCCUgGCGGGgcaaGUAC-CCGCCu---- -3'
miRNA:   3'- aGGAgCGCCCa---CAUGuGGCGGuuucc -5'
24586 3' -55.7 NC_005264.1 + 12911 0.67 0.91328
Target:  5'- gCCUUGCGauGGUGUGCGUgGCCAucguGGc -3'
miRNA:   3'- aGGAGCGC--CCACAUGUGgCGGUuu--CC- -5'
24586 3' -55.7 NC_005264.1 + 16450 0.71 0.686797
Target:  5'- gCC-CGCGGGUGUGaacguggucgaacCAgCGCUggGGGg -3'
miRNA:   3'- aGGaGCGCCCACAU-------------GUgGCGGuuUCC- -5'
24586 3' -55.7 NC_005264.1 + 31686 0.73 0.576992
Target:  5'- cUCUCgGCGGGgcUGC-CCGCCAAAGGu -3'
miRNA:   3'- aGGAG-CGCCCacAUGuGGCGGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 34632 0.68 0.859484
Target:  5'- gCC-CGCgGGGUGUuCGCgGCCAccGGu -3'
miRNA:   3'- aGGaGCG-CCCACAuGUGgCGGUuuCC- -5'
24586 3' -55.7 NC_005264.1 + 38024 0.68 0.843933
Target:  5'- gCCUUGUuacuGGGUuaGUGCGCCGCUugucagugGAAGGc -3'
miRNA:   3'- aGGAGCG----CCCA--CAUGUGGCGG--------UUUCC- -5'
24586 3' -55.7 NC_005264.1 + 38870 1.1 0.003241
Target:  5'- cUCCUCGCGGGUGUACACCGCCAAAGGc -3'
miRNA:   3'- -AGGAGCGCCCACAUGUGGCGGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 42119 0.66 0.924472
Target:  5'- aCCUgGCaGGGUGUGCgcugagACCGCaCGAGa- -3'
miRNA:   3'- aGGAgCG-CCCACAUG------UGGCG-GUUUcc -5'
24586 3' -55.7 NC_005264.1 + 51332 0.75 0.489218
Target:  5'- aCUUCguaugaggGCGGGUGU-CGCCGCCGAcAGGa -3'
miRNA:   3'- aGGAG--------CGCCCACAuGUGGCGGUU-UCC- -5'
24586 3' -55.7 NC_005264.1 + 64160 0.68 0.859484
Target:  5'- aUCCg-GCcGGUGUgcaaGCGCCGCCAGcacuGGGu -3'
miRNA:   3'- -AGGagCGcCCACA----UGUGGCGGUU----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.