miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24586 3' -55.7 NC_005264.1 + 81404 0.68 0.874235
Target:  5'- ---aUGCGGGUGcGCGCCGCUu--GGu -3'
miRNA:   3'- aggaGCGCCCACaUGUGGCGGuuuCC- -5'
24586 3' -55.7 NC_005264.1 + 78647 0.66 0.924472
Target:  5'- cUCCUCGCuccaGcUGUACGCCGCaGAAGu -3'
miRNA:   3'- -AGGAGCGc---CcACAUGUGGCGgUUUCc -5'
24586 3' -55.7 NC_005264.1 + 51332 0.75 0.489218
Target:  5'- aCUUCguaugaggGCGGGUGU-CGCCGCCGAcAGGa -3'
miRNA:   3'- aGGAG--------CGCCCACAuGUGGCGGUU-UCC- -5'
24586 3' -55.7 NC_005264.1 + 31686 0.73 0.576992
Target:  5'- cUCUCgGCGGGgcUGC-CCGCCAAAGGu -3'
miRNA:   3'- aGGAG-CGCCCacAUGuGGCGGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 3394 0.66 0.929718
Target:  5'- cUCCggaaCGCGGGgucgGUGCGCgGggGAGGGa -3'
miRNA:   3'- -AGGa---GCGCCCa---CAUGUGgCggUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 6564 0.66 0.929718
Target:  5'- gCCUCGUccacGGUGaUGCGCCccCCAGGGGc -3'
miRNA:   3'- aGGAGCGc---CCAC-AUGUGGc-GGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 42119 0.66 0.924472
Target:  5'- aCCUgGCaGGGUGUGCgcugagACCGCaCGAGa- -3'
miRNA:   3'- aGGAgCG-CCCACAUG------UGGCG-GUUUcc -5'
24586 3' -55.7 NC_005264.1 + 87094 0.66 0.923935
Target:  5'- gCCUCGCGGGUaacGCACCcagacugGCCuccGGc -3'
miRNA:   3'- aGGAGCGCCCAca-UGUGG-------CGGuuuCC- -5'
24586 3' -55.7 NC_005264.1 + 132766 0.66 0.918993
Target:  5'- gUCCgggCGCGGcg--GCGCCGaCGAGGGg -3'
miRNA:   3'- -AGGa--GCGCCcacaUGUGGCgGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 133733 0.66 0.918993
Target:  5'- gCCUCGgGGGguucgaggacgUGUucgucauucGCACCGCCGAc-- -3'
miRNA:   3'- aGGAGCgCCC-----------ACA---------UGUGGCGGUUucc -5'
24586 3' -55.7 NC_005264.1 + 151881 0.66 0.918432
Target:  5'- gUCUUCGCGGGcaucagcUGUAUGUgGCgGAGGGg -3'
miRNA:   3'- -AGGAGCGCCC-------ACAUGUGgCGgUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 129423 0.67 0.91328
Target:  5'- aUUCUCGCGGGcGUAC-UCGCCc---- -3'
miRNA:   3'- -AGGAGCGCCCaCAUGuGGCGGuuucc -5'
24586 3' -55.7 NC_005264.1 + 102739 0.67 0.907337
Target:  5'- --gUCGCGGcGuUGUGgGCCGCCGGcaguAGGc -3'
miRNA:   3'- aggAGCGCC-C-ACAUgUGGCGGUU----UCC- -5'
24586 3' -55.7 NC_005264.1 + 874 0.67 0.901791
Target:  5'- gCCgCGCccggacguacgacuGGGUGUACggccccgugucgcggGCCGCUggGGGg -3'
miRNA:   3'- aGGaGCG--------------CCCACAUG---------------UGGCGGuuUCC- -5'
24586 3' -55.7 NC_005264.1 + 3924 0.68 0.881295
Target:  5'- uUUCUCa-GGGUGgcCGCCGUCAagAAGGg -3'
miRNA:   3'- -AGGAGcgCCCACauGUGGCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 6461 0.68 0.847105
Target:  5'- cUCCUcggcggcgcggcgaaCGuCGGG-GUGCGCgGCCAucGAGGg -3'
miRNA:   3'- -AGGA---------------GC-GCCCaCAUGUGgCGGU--UUCC- -5'
24586 3' -55.7 NC_005264.1 + 5364 0.68 0.847105
Target:  5'- gCCUCGCGGaUGauucACACCggcgcucgauugcuuGCCAGGGGc -3'
miRNA:   3'- aGGAGCGCCcACa---UGUGG---------------CGGUUUCC- -5'
24586 3' -55.7 NC_005264.1 + 91280 0.69 0.835872
Target:  5'- gUCCUgaUGCGGaUGUGCAcgagcuCCGCCAGcAGGc -3'
miRNA:   3'- -AGGA--GCGCCcACAUGU------GGCGGUU-UCC- -5'
24586 3' -55.7 NC_005264.1 + 6256 0.7 0.765523
Target:  5'- cUCCgUCGCGGucGU-CGCCGCCGucGGg -3'
miRNA:   3'- -AGG-AGCGCCcaCAuGUGGCGGUuuCC- -5'
24586 3' -55.7 NC_005264.1 + 150736 0.73 0.62735
Target:  5'- uUUCUCGCGGGggUGUGCA-CGCCAGGc- -3'
miRNA:   3'- -AGGAGCGCCC--ACAUGUgGCGGUUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.