miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24586 5' -53.7 NC_005264.1 + 143340 0.66 0.958262
Target:  5'- cGUCgUCUGGCAGCuggAACcUCGcAGGUg -3'
miRNA:   3'- -UAGgAGAUCGUCGca-UUGcAGC-UCCA- -5'
24586 5' -53.7 NC_005264.1 + 90584 0.66 0.954376
Target:  5'- -gCCUCU-GCAGCGcaggaucuucaUGAUGUCGcGGUg -3'
miRNA:   3'- uaGGAGAuCGUCGC-----------AUUGCAGCuCCA- -5'
24586 5' -53.7 NC_005264.1 + 153138 0.66 0.950253
Target:  5'- --gCUC-AGCGGCGcgaaacAGCGUCGAGGc -3'
miRNA:   3'- uagGAGaUCGUCGCa-----UUGCAGCUCCa -5'
24586 5' -53.7 NC_005264.1 + 25353 0.66 0.950253
Target:  5'- -aCUUCaugaacGCgAGCGUGugGUCGAGGa -3'
miRNA:   3'- uaGGAGau----CG-UCGCAUugCAGCUCCa -5'
24586 5' -53.7 NC_005264.1 + 34111 0.66 0.950253
Target:  5'- --gCUC-AGCGGCGcgaaacAGCGUCGAGGc -3'
miRNA:   3'- uagGAGaUCGUCGCa-----UUGCAGCUCCa -5'
24586 5' -53.7 NC_005264.1 + 123967 0.67 0.925965
Target:  5'- -gCCUUUGGCGGUGUAcaccCG-CGAGGa -3'
miRNA:   3'- uaGGAGAUCGUCGCAUu---GCaGCUCCa -5'
24586 5' -53.7 NC_005264.1 + 7501 0.68 0.914509
Target:  5'- uUCCUCUacGGCAGCGaUAGCGaCGAcGUc -3'
miRNA:   3'- uAGGAGA--UCGUCGC-AUUGCaGCUcCA- -5'
24586 5' -53.7 NC_005264.1 + 126528 0.68 0.914509
Target:  5'- uUCCUCUacGGCAGCGaUAGCGaCGAcGUc -3'
miRNA:   3'- uAGGAGA--UCGUCGC-AUUGCaGCUcCA- -5'
24586 5' -53.7 NC_005264.1 + 59549 0.68 0.902062
Target:  5'- aGUUCagUAGCAGCacGGCGUCGGGGc -3'
miRNA:   3'- -UAGGagAUCGUCGcaUUGCAGCUCCa -5'
24586 5' -53.7 NC_005264.1 + 22662 0.68 0.902062
Target:  5'- -gCUUUUGGgGGCGgu-CGUCGGGGUa -3'
miRNA:   3'- uaGGAGAUCgUCGCauuGCAGCUCCA- -5'
24586 5' -53.7 NC_005264.1 + 35890 0.68 0.895473
Target:  5'- uUCUUCUug-GGCGUggUGUCGGGGUc -3'
miRNA:   3'- uAGGAGAucgUCGCAuuGCAGCUCCA- -5'
24586 5' -53.7 NC_005264.1 + 48365 0.69 0.859014
Target:  5'- -gCCUCguugcGCAGUGccGCGUCGAGGc -3'
miRNA:   3'- uaGGAGau---CGUCGCauUGCAGCUCCa -5'
24586 5' -53.7 NC_005264.1 + 121693 0.7 0.829416
Target:  5'- aGUCCUCUggccccgaccgcgagGGCAGCGUggUGgcgGAGGa -3'
miRNA:   3'- -UAGGAGA---------------UCGUCGCAuuGCag-CUCCa -5'
24586 5' -53.7 NC_005264.1 + 2666 0.7 0.829416
Target:  5'- aGUCCUCUggccccgaccgcgagGGCAGCGUggUGgcgGAGGa -3'
miRNA:   3'- -UAGGAGA---------------UCGUCGCAuuGCag-CUCCa -5'
24586 5' -53.7 NC_005264.1 + 125488 0.79 0.344322
Target:  5'- cUCCUC-GGCGGCGcggcgAACGUCGGGGUg -3'
miRNA:   3'- uAGGAGaUCGUCGCa----UUGCAGCUCCA- -5'
24586 5' -53.7 NC_005264.1 + 6461 0.79 0.344322
Target:  5'- cUCCUC-GGCGGCGcggcgAACGUCGGGGUg -3'
miRNA:   3'- uAGGAGaUCGUCGCa----UUGCAGCUCCA- -5'
24586 5' -53.7 NC_005264.1 + 38908 0.96 0.032154
Target:  5'- gAUCCUCUAGCAGCG-AACGUCGAGGUu -3'
miRNA:   3'- -UAGGAGAUCGUCGCaUUGCAGCUCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.