Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24586 | 5' | -53.7 | NC_005264.1 | + | 38908 | 0.96 | 0.032154 |
Target: 5'- gAUCCUCUAGCAGCG-AACGUCGAGGUu -3' miRNA: 3'- -UAGGAGAUCGUCGCaUUGCAGCUCCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 125488 | 0.79 | 0.344322 |
Target: 5'- cUCCUC-GGCGGCGcggcgAACGUCGGGGUg -3' miRNA: 3'- uAGGAGaUCGUCGCa----UUGCAGCUCCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 6461 | 0.79 | 0.344322 |
Target: 5'- cUCCUC-GGCGGCGcggcgAACGUCGGGGUg -3' miRNA: 3'- uAGGAGaUCGUCGCa----UUGCAGCUCCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 121693 | 0.7 | 0.829416 |
Target: 5'- aGUCCUCUggccccgaccgcgagGGCAGCGUggUGgcgGAGGa -3' miRNA: 3'- -UAGGAGA---------------UCGUCGCAuuGCag-CUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 2666 | 0.7 | 0.829416 |
Target: 5'- aGUCCUCUggccccgaccgcgagGGCAGCGUggUGgcgGAGGa -3' miRNA: 3'- -UAGGAGA---------------UCGUCGCAuuGCag-CUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 48365 | 0.69 | 0.859014 |
Target: 5'- -gCCUCguugcGCAGUGccGCGUCGAGGc -3' miRNA: 3'- uaGGAGau---CGUCGCauUGCAGCUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 35890 | 0.68 | 0.895473 |
Target: 5'- uUCUUCUug-GGCGUggUGUCGGGGUc -3' miRNA: 3'- uAGGAGAucgUCGCAuuGCAGCUCCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 22662 | 0.68 | 0.902062 |
Target: 5'- -gCUUUUGGgGGCGgu-CGUCGGGGUa -3' miRNA: 3'- uaGGAGAUCgUCGCauuGCAGCUCCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 59549 | 0.68 | 0.902062 |
Target: 5'- aGUUCagUAGCAGCacGGCGUCGGGGc -3' miRNA: 3'- -UAGGagAUCGUCGcaUUGCAGCUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 7501 | 0.68 | 0.914509 |
Target: 5'- uUCCUCUacGGCAGCGaUAGCGaCGAcGUc -3' miRNA: 3'- uAGGAGA--UCGUCGC-AUUGCaGCUcCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 126528 | 0.68 | 0.914509 |
Target: 5'- uUCCUCUacGGCAGCGaUAGCGaCGAcGUc -3' miRNA: 3'- uAGGAGA--UCGUCGC-AUUGCaGCUcCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 123967 | 0.67 | 0.925965 |
Target: 5'- -gCCUUUGGCGGUGUAcaccCG-CGAGGa -3' miRNA: 3'- uaGGAGAUCGUCGCAUu---GCaGCUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 153138 | 0.66 | 0.950253 |
Target: 5'- --gCUC-AGCGGCGcgaaacAGCGUCGAGGc -3' miRNA: 3'- uagGAGaUCGUCGCa-----UUGCAGCUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 25353 | 0.66 | 0.950253 |
Target: 5'- -aCUUCaugaacGCgAGCGUGugGUCGAGGa -3' miRNA: 3'- uaGGAGau----CG-UCGCAUugCAGCUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 34111 | 0.66 | 0.950253 |
Target: 5'- --gCUC-AGCGGCGcgaaacAGCGUCGAGGc -3' miRNA: 3'- uagGAGaUCGUCGCa-----UUGCAGCUCCa -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 90584 | 0.66 | 0.954376 |
Target: 5'- -gCCUCU-GCAGCGcaggaucuucaUGAUGUCGcGGUg -3' miRNA: 3'- uaGGAGAuCGUCGC-----------AUUGCAGCuCCA- -5' |
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24586 | 5' | -53.7 | NC_005264.1 | + | 143340 | 0.66 | 0.958262 |
Target: 5'- cGUCgUCUGGCAGCuggAACcUCGcAGGUg -3' miRNA: 3'- -UAGgAGAUCGUCGca-UUGcAGC-UCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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