miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24587 3' -54 NC_005264.1 + 66489 0.66 0.935951
Target:  5'- cAAUgcUUGGC-GGGCuGCGCGGCgcgCUc -3'
miRNA:   3'- -UUAauAACCGaCCCG-CGCGCUGa--GAu -5'
24587 3' -54 NC_005264.1 + 162312 0.66 0.935951
Target:  5'- -----aUGGCUGGGUGCuCGGCg--- -3'
miRNA:   3'- uuaauaACCGACCCGCGcGCUGagau -5'
24587 3' -54 NC_005264.1 + 90162 0.66 0.925292
Target:  5'- ------aGGCgaucaGGGgGgGCGACUCUGa -3'
miRNA:   3'- uuaauaaCCGa----CCCgCgCGCUGAGAU- -5'
24587 3' -54 NC_005264.1 + 162192 0.66 0.925292
Target:  5'- ------gGGggGGGCGCGUGAgcCUCUAu -3'
miRNA:   3'- uuaauaaCCgaCCCGCGCGCU--GAGAU- -5'
24587 3' -54 NC_005264.1 + 43165 0.66 0.925292
Target:  5'- ------gGGggGGGCGCGUGAgcCUCUAu -3'
miRNA:   3'- uuaauaaCCgaCCCGCGCGCU--GAGAU- -5'
24587 3' -54 NC_005264.1 + 155949 0.67 0.900903
Target:  5'- ------cGcGCUGGGacuGCGCGGCUCg- -3'
miRNA:   3'- uuaauaaC-CGACCCg--CGCGCUGAGau -5'
24587 3' -54 NC_005264.1 + 27634 0.68 0.872535
Target:  5'- ------cGGCUGGuCGCGCGaACUCg- -3'
miRNA:   3'- uuaauaaCCGACCcGCGCGC-UGAGau -5'
24587 3' -54 NC_005264.1 + 116977 0.68 0.872535
Target:  5'- ---cAUUGGC--GGCGCGCaGACUCg- -3'
miRNA:   3'- uuaaUAACCGacCCGCGCG-CUGAGau -5'
24587 3' -54 NC_005264.1 + 29272 0.7 0.767196
Target:  5'- aGAUUGUUGGaCUgugcgcGGGCGCGUGcCUCg- -3'
miRNA:   3'- -UUAAUAACC-GA------CCCGCGCGCuGAGau -5'
24587 3' -54 NC_005264.1 + 79986 0.71 0.716891
Target:  5'- ------cGGCUGGGCGgGCGGC-Cg- -3'
miRNA:   3'- uuaauaaCCGACCCGCgCGCUGaGau -5'
24587 3' -54 NC_005264.1 + 810 0.74 0.528153
Target:  5'- ------cGGCUGGGUGCGCGGC-Cg- -3'
miRNA:   3'- uuaauaaCCGACCCGCGCGCUGaGau -5'
24587 3' -54 NC_005264.1 + 72587 0.79 0.30606
Target:  5'- -----aUGGCUGGGCGCGCGAUg--- -3'
miRNA:   3'- uuaauaACCGACCCGCGCGCUGagau -5'
24587 3' -54 NC_005264.1 + 39170 1.04 0.007017
Target:  5'- gAAUUAUUGGCUGGGCGCGCGACUCUAc -3'
miRNA:   3'- -UUAAUAACCGACCCGCGCGCUGAGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.