miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2459 5' -63.1 NC_001436.1 + 1272 0.66 0.058886
Target:  5'- cUCCuccAGGCCUUGGAGGauagAGGCCc- -3'
miRNA:   3'- -AGGccuUCCGGGACCUCCg---UCCGGua -5'
2459 5' -63.1 NC_001436.1 + 2231 0.66 0.055197
Target:  5'- uUUCGGggGGCCUUgGGAGGUguucuAGcCCAa -3'
miRNA:   3'- -AGGCCuuCCGGGA-CCUCCG-----UCcGGUa -5'
2459 5' -63.1 NC_001436.1 + 973 0.66 0.053438
Target:  5'- gCCGGAuGGUCugcauaaaCUGGGGGCuuccagGGGCCGc -3'
miRNA:   3'- aGGCCUuCCGG--------GACCUCCG------UCCGGUa -5'
2459 5' -63.1 NC_001436.1 + 5221 0.68 0.038597
Target:  5'- gCUGGAGacGGCuCCUGuauaGGGGCAGGuCCAUg -3'
miRNA:   3'- aGGCCUU--CCG-GGAC----CUCCGUCC-GGUA- -5'
2459 5' -63.1 NC_001436.1 + 484 0.7 0.0236
Target:  5'- uUCCGcGGccGCCCcGGGGGCuGGCCGc -3'
miRNA:   3'- -AGGC-CUucCGGGaCCUCCGuCCGGUa -5'
2459 5' -63.1 NC_001436.1 + 2273 1.06 0.000013
Target:  5'- gUCCGGAAGGCCCUGGAGGCAGGCCAUa -3'
miRNA:   3'- -AGGCCUUCCGGGACCUCCGUCCGGUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.