miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24590 3' -53.7 NC_005264.1 + 155259 0.66 0.965859
Target:  5'- aUCuCCGCAGCggcgcGGGGUaGGCgGCGGGGa -3'
miRNA:   3'- cAGuGGUGUUGa----CUCCA-CCG-UGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 139268 0.66 0.962472
Target:  5'- cGUCAUCACGucgaugauuaUGuGGUgGGCGCAGAa -3'
miRNA:   3'- -CAGUGGUGUug--------ACuCCA-CCGUGUCUc -5'
24590 3' -53.7 NC_005264.1 + 52652 0.66 0.962472
Target:  5'- uGUgGCCgAUGACUcggcGGGGaagGGCACGGAGa -3'
miRNA:   3'- -CAgUGG-UGUUGA----CUCCa--CCGUGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 97525 0.66 0.962472
Target:  5'- --uGCCGCGGCUGuGGcGUGGCAgCGGGc -3'
miRNA:   3'- cagUGGUGUUGAC-UC-CACCGU-GUCUc -5'
24590 3' -53.7 NC_005264.1 + 17358 0.66 0.958859
Target:  5'- -cCGCgGCAGCUGGcGGcGGCGCGGu- -3'
miRNA:   3'- caGUGgUGUUGACU-CCaCCGUGUCuc -5'
24590 3' -53.7 NC_005264.1 + 152952 0.66 0.958859
Target:  5'- -cCGCCAgGGCUGGGaaggccGUGGCGCGccGGGa -3'
miRNA:   3'- caGUGGUgUUGACUC------CACCGUGU--CUC- -5'
24590 3' -53.7 NC_005264.1 + 51083 0.66 0.958859
Target:  5'- cUCGCUAgAACggauaAGGUGGCugAGAa -3'
miRNA:   3'- cAGUGGUgUUGac---UCCACCGugUCUc -5'
24590 3' -53.7 NC_005264.1 + 67103 0.66 0.955013
Target:  5'- -aCGCgCGCcuaUGuAGGUGGUACGGAGa -3'
miRNA:   3'- caGUG-GUGuugAC-UCCACCGUGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 146228 0.66 0.955013
Target:  5'- aUCGCCGCGGC-GucGUGGCGCccGGAa -3'
miRNA:   3'- cAGUGGUGUUGaCucCACCGUG--UCUc -5'
24590 3' -53.7 NC_005264.1 + 19094 0.66 0.950931
Target:  5'- --aGCCAgGACUGcaccgcGGcGGCGCGGAGa -3'
miRNA:   3'- cagUGGUgUUGACu-----CCaCCGUGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 35975 0.67 0.942042
Target:  5'- uUCGCCugGA---GGG-GGCGCGGAGa -3'
miRNA:   3'- cAGUGGugUUgacUCCaCCGUGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 131585 0.67 0.93723
Target:  5'- uUCGCCGCGaagauaccGCUGAGGggGGaCACGGc- -3'
miRNA:   3'- cAGUGGUGU--------UGACUCCa-CC-GUGUCuc -5'
24590 3' -53.7 NC_005264.1 + 12558 0.67 0.93723
Target:  5'- uUCGCCGCGaagauaccGCUGAGGggGGaCACGGc- -3'
miRNA:   3'- cAGUGGUGU--------UGACUCCa-CC-GUGUCuc -5'
24590 3' -53.7 NC_005264.1 + 122100 0.67 0.921302
Target:  5'- cUCGCCGCGACUGGcGGcGGC-C-GAGg -3'
miRNA:   3'- cAGUGGUGUUGACU-CCaCCGuGuCUC- -5'
24590 3' -53.7 NC_005264.1 + 3073 0.67 0.921302
Target:  5'- cUCGCCGCGACUGGcGGcGGC-C-GAGg -3'
miRNA:   3'- cAGUGGUGUUGACU-CCaCCGuGuCUC- -5'
24590 3' -53.7 NC_005264.1 + 123850 0.67 0.920733
Target:  5'- cGUCGCUcuGCAGgUGuuccgccAGGcGGCACAGAGu -3'
miRNA:   3'- -CAGUGG--UGUUgAC-------UCCaCCGUGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 4824 0.67 0.920733
Target:  5'- cGUCGCUcuGCAGgUGuuccgccAGGcGGCACAGAGu -3'
miRNA:   3'- -CAGUGG--UGUUgAC-------UCCaCCGUGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 6964 0.68 0.915495
Target:  5'- cGUCACUGaaguGAUgaUGAGaGUGGCGCGGGGu -3'
miRNA:   3'- -CAGUGGUg---UUG--ACUC-CACCGUGUCUC- -5'
24590 3' -53.7 NC_005264.1 + 135579 0.68 0.903139
Target:  5'- cGUCGCuCGCGACUacGGGUGGguCGGGa -3'
miRNA:   3'- -CAGUG-GUGUUGAc-UCCACCguGUCUc -5'
24590 3' -53.7 NC_005264.1 + 102874 0.69 0.875537
Target:  5'- -cCGCCGCGugGCUGAGc-GGCGCGGAc -3'
miRNA:   3'- caGUGGUGU--UGACUCcaCCGUGUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.