miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 154507 0.66 0.583804
Target:  5'- gGuCUGCGGGGCgcaCAUGCCGCgC-GCa -3'
miRNA:   3'- gC-GGCGCUCCGac-GUGCGGCGgGaCG- -5'
24593 5' -64.2 NC_005264.1 + 26012 0.66 0.583804
Target:  5'- uCGgCGCGuGGCUGUaaucgccaaGCGuCCGCCa-GCu -3'
miRNA:   3'- -GCgGCGCuCCGACG---------UGC-GGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 51777 0.66 0.583804
Target:  5'- aGCuCGCGcGGCgGCACuuCGUCCgGCg -3'
miRNA:   3'- gCG-GCGCuCCGaCGUGcgGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 148396 0.66 0.583804
Target:  5'- uGCCGCcaugccuauuGGGGaggGCAgGCCGCCauacggGCg -3'
miRNA:   3'- gCGGCG----------CUCCga-CGUgCGGCGGga----CG- -5'
24593 5' -64.2 NC_005264.1 + 66537 0.66 0.58093
Target:  5'- aCGaCCGCGuugcGGGCgucgGCGauuuccacaagcucCGCCGCCacCUGCu -3'
miRNA:   3'- -GC-GGCGC----UCCGa---CGU--------------GCGGCGG--GACG- -5'
24593 5' -64.2 NC_005264.1 + 127025 0.66 0.574238
Target:  5'- cCGCCauuGCGGGGCcgGCAgaGgCGCCC-GCc -3'
miRNA:   3'- -GCGG---CGCUCCGa-CGUg-CgGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 64420 0.66 0.574238
Target:  5'- aCGCCGCG-GGCacgGCGaugacgucUGCCGCggcucuaacucCCUGUa -3'
miRNA:   3'- -GCGGCGCuCCGa--CGU--------GCGGCG-----------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 56507 0.66 0.574238
Target:  5'- gGuuGCuGGGGCucUGUggagGgGUCGCCCUGCc -3'
miRNA:   3'- gCggCG-CUCCG--ACG----UgCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 64248 0.66 0.574238
Target:  5'- uGUCGgcaaacauacUGGGGCUGCggGCGCCGUucauCUUGCg -3'
miRNA:   3'- gCGGC----------GCUCCGACG--UGCGGCG----GGACG- -5'
24593 5' -64.2 NC_005264.1 + 104719 0.66 0.574238
Target:  5'- gGCugCGCGAGGUcGCgcagcaGCGCCGCCUa-- -3'
miRNA:   3'- gCG--GCGCUCCGaCG------UGCGGCGGGacg -5'
24593 5' -64.2 NC_005264.1 + 24334 0.66 0.574238
Target:  5'- gGCCGCaguGAacGGCgggGCAuaucccCGCCGCUCUGg -3'
miRNA:   3'- gCGGCG---CU--CCGa--CGU------GCGGCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 7998 0.66 0.574238
Target:  5'- cCGCCauuGCGGGGCcgGCAgaGgCGCCC-GCc -3'
miRNA:   3'- -GCGG---CGCUCCGa-CGUg-CgGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 148316 0.66 0.571375
Target:  5'- gCGCCGguguucguauggucUGAGGUUGCguGCGCgguCGCCCUcucuGCg -3'
miRNA:   3'- -GCGGC--------------GCUCCGACG--UGCG---GCGGGA----CG- -5'
24593 5' -64.2 NC_005264.1 + 74120 0.66 0.568515
Target:  5'- uGUCGCGGcugggguccucaugcGGCaUGCACGCCacGCagCUGCu -3'
miRNA:   3'- gCGGCGCU---------------CCG-ACGUGCGG--CGg-GACG- -5'
24593 5' -64.2 NC_005264.1 + 133152 0.66 0.564708
Target:  5'- gCGaCCGgaugaCGAGGCUGgACGCU-CCCUGa -3'
miRNA:   3'- -GC-GGC-----GCUCCGACgUGCGGcGGGACg -5'
24593 5' -64.2 NC_005264.1 + 136452 0.66 0.564708
Target:  5'- gGgCGCuGAGGCcGCgcucagagacgGCGCCGCgcagCCUGCc -3'
miRNA:   3'- gCgGCG-CUCCGaCG-----------UGCGGCG----GGACG- -5'
24593 5' -64.2 NC_005264.1 + 34143 0.66 0.564708
Target:  5'- gGgCGCGuAGGCUucgggucgugGUAC-CgCGCCCUGCa -3'
miRNA:   3'- gCgGCGC-UCCGA----------CGUGcG-GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 16437 0.66 0.564708
Target:  5'- uGCCGCGGGGcCUGCcCGCgGgUgUGa -3'
miRNA:   3'- gCGGCGCUCC-GACGuGCGgCgGgACg -5'
24593 5' -64.2 NC_005264.1 + 123494 0.66 0.564708
Target:  5'- gGCCGCGcGGUUGCugGgCGaUgUGCu -3'
miRNA:   3'- gCGGCGCuCCGACGugCgGCgGgACG- -5'
24593 5' -64.2 NC_005264.1 + 78508 0.66 0.564708
Target:  5'- aCGCgGUGAGGCcaguaaccauCGCGCCguGCCCggUGCa -3'
miRNA:   3'- -GCGgCGCUCCGac--------GUGCGG--CGGG--ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.