miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 148396 0.66 0.583804
Target:  5'- uGCCGCcaugccuauuGGGGaggGCAgGCCGCCauacggGCg -3'
miRNA:   3'- gCGGCG----------CUCCga-CGUgCGGCGGga----CG- -5'
24593 5' -64.2 NC_005264.1 + 103815 0.66 0.561857
Target:  5'- gGaCCGCGGGGCuUGCgcucgauucgcugaGCGCCaagcuucuggGCCCgGCc -3'
miRNA:   3'- gC-GGCGCUCCG-ACG--------------UGCGG----------CGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 144780 0.66 0.55522
Target:  5'- cCGCgCGCccuGGCUcGCgGCGCCGCCgCUucGCg -3'
miRNA:   3'- -GCG-GCGcu-CCGA-CG-UGCGGCGG-GA--CG- -5'
24593 5' -64.2 NC_005264.1 + 6679 0.66 0.55522
Target:  5'- gCGCCagcaGCGAGGCcgagacgGC-CGCCucgcccucGUCCUGCc -3'
miRNA:   3'- -GCGG----CGCUCCGa------CGuGCGG--------CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 154638 0.66 0.55522
Target:  5'- gGCCGCGGGGCauaaUGCcagucACGCUGU--UGCu -3'
miRNA:   3'- gCGGCGCUCCG----ACG-----UGCGGCGggACG- -5'
24593 5' -64.2 NC_005264.1 + 146260 0.66 0.55522
Target:  5'- gGCCG-GAGuCaugUGCGcCGCCGCCCcgGCg -3'
miRNA:   3'- gCGGCgCUCcG---ACGU-GCGGCGGGa-CG- -5'
24593 5' -64.2 NC_005264.1 + 32401 0.66 0.536391
Target:  5'- cCGCCGCGAcuuuGuGCUGgaACGCCacuccCUCUGCa -3'
miRNA:   3'- -GCGGCGCU----C-CGACg-UGCGGc----GGGACG- -5'
24593 5' -64.2 NC_005264.1 + 5440 0.66 0.536391
Target:  5'- uCGCCGCucucgccggagGAGGUccuaaccGCccCGCCGCCCaGCa -3'
miRNA:   3'- -GCGGCG-----------CUCCGa------CGu-GCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 113091 0.66 0.536391
Target:  5'- aGCCGCGGGGUUGUGUGUCaugGUgCUGUa -3'
miRNA:   3'- gCGGCGCUCCGACGUGCGG---CGgGACG- -5'
24593 5' -64.2 NC_005264.1 + 39966 0.66 0.563757
Target:  5'- gGCUGCGAGuCUGCG-GUCGUauuuccuCCUGCg -3'
miRNA:   3'- gCGGCGCUCcGACGUgCGGCG-------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 123494 0.66 0.564708
Target:  5'- gGCCGCGcGGUUGCugGgCGaUgUGCu -3'
miRNA:   3'- gCGGCGCuCCGACGugCgGCgGgACG- -5'
24593 5' -64.2 NC_005264.1 + 3074 0.66 0.564708
Target:  5'- uCGCCGCGAcuGGCgGCG-GCCGaggaCCCguucggGCg -3'
miRNA:   3'- -GCGGCGCU--CCGaCGUgCGGC----GGGa-----CG- -5'
24593 5' -64.2 NC_005264.1 + 26012 0.66 0.583804
Target:  5'- uCGgCGCGuGGCUGUaaucgccaaGCGuCCGCCa-GCu -3'
miRNA:   3'- -GCgGCGCuCCGACG---------UGC-GGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 51777 0.66 0.583804
Target:  5'- aGCuCGCGcGGCgGCACuuCGUCCgGCg -3'
miRNA:   3'- gCG-GCGCuCCGaCGUGcgGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 7998 0.66 0.574238
Target:  5'- cCGCCauuGCGGGGCcgGCAgaGgCGCCC-GCc -3'
miRNA:   3'- -GCGG---CGCUCCGa-CGUg-CgGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 24334 0.66 0.574238
Target:  5'- gGCCGCaguGAacGGCgggGCAuaucccCGCCGCUCUGg -3'
miRNA:   3'- gCGGCG---CU--CCGa--CGU------GCGGCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 104719 0.66 0.574238
Target:  5'- gGCugCGCGAGGUcGCgcagcaGCGCCGCCUa-- -3'
miRNA:   3'- gCG--GCGCUCCGaCG------UGCGGCGGGacg -5'
24593 5' -64.2 NC_005264.1 + 64248 0.66 0.574238
Target:  5'- uGUCGgcaaacauacUGGGGCUGCggGCGCCGUucauCUUGCg -3'
miRNA:   3'- gCGGC----------GCUCCGACG--UGCGGCG----GGACG- -5'
24593 5' -64.2 NC_005264.1 + 74120 0.66 0.568515
Target:  5'- uGUCGCGGcugggguccucaugcGGCaUGCACGCCacGCagCUGCu -3'
miRNA:   3'- gCGGCGCU---------------CCG-ACGUGCGG--CGg-GACG- -5'
24593 5' -64.2 NC_005264.1 + 78508 0.66 0.564708
Target:  5'- aCGCgGUGAGGCcaguaaccauCGCGCCguGCCCggUGCa -3'
miRNA:   3'- -GCGgCGCUCCGac--------GUGCGG--CGGG--ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.