miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 46414 1.11 0.00042
Target:  5'- cCGCCGCGAGGCUGCACGCCGCCCUGCg -3'
miRNA:   3'- -GCGGCGCUCCGACGUGCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 146664 0.83 0.048074
Target:  5'- uGCCGCGAccgaccuccgcgcagGGCgGCAuUGCCGCCCUGCg -3'
miRNA:   3'- gCGGCGCU---------------CCGaCGU-GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 31600 0.81 0.063012
Target:  5'- uGCUcucugGCGAGGCgGCGCGCauCGCCCUGCg -3'
miRNA:   3'- gCGG-----CGCUCCGaCGUGCG--GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 150627 0.81 0.063012
Target:  5'- uGCUcucugGCGAGGCgGCGCGCauCGCCCUGCg -3'
miRNA:   3'- gCGG-----CGCUCCGaCGUGCG--GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 69829 0.79 0.087507
Target:  5'- aCGCCGcCGGGGUga-AgGCCGCCCUGCu -3'
miRNA:   3'- -GCGGC-GCUCCGacgUgCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 26363 0.79 0.089728
Target:  5'- gCGCCGCGgcAGGCUGCgcgGCGCCGUCuCUGa -3'
miRNA:   3'- -GCGGCGC--UCCGACG---UGCGGCGG-GACg -5'
24593 5' -64.2 NC_005264.1 + 149874 0.78 0.101659
Target:  5'- uCGUCGuCGGcGGCgGCGCGCCGCCCgguagGCa -3'
miRNA:   3'- -GCGGC-GCU-CCGaCGUGCGGCGGGa----CG- -5'
24593 5' -64.2 NC_005264.1 + 30848 0.78 0.101659
Target:  5'- uCGUCGuCGGcGGCgGCGCGCCGCCCgguagGCa -3'
miRNA:   3'- -GCGGC-GCU-CCGaCGUGCGGCGGGa----CG- -5'
24593 5' -64.2 NC_005264.1 + 68257 0.76 0.13335
Target:  5'- gCGCCGCGGGcggccuGCUGC-UGCCGCCUcuuUGCg -3'
miRNA:   3'- -GCGGCGCUC------CGACGuGCGGCGGG---ACG- -5'
24593 5' -64.2 NC_005264.1 + 16154 0.76 0.13335
Target:  5'- -cUCGCGcaGGGCgGCAaUGCCGCCCUGCg -3'
miRNA:   3'- gcGGCGC--UCCGaCGU-GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 12188 0.76 0.134659
Target:  5'- aGCCcCGAGGCauggucgcagggcgaUGCGCGCCGCCUcGCc -3'
miRNA:   3'- gCGGcGCUCCG---------------ACGUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 131215 0.76 0.134659
Target:  5'- aGCCcCGAGGCauggucgcagggcgaUGCGCGCCGCCUcGCc -3'
miRNA:   3'- gCGGcGCUCCG---------------ACGUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 43321 0.76 0.143459
Target:  5'- uCGuUCGCGAgGGCUGC-CGCCucggagcacGCCCUGCg -3'
miRNA:   3'- -GC-GGCGCU-CCGACGuGCGG---------CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 158829 0.75 0.153893
Target:  5'- cCGCCaagccccugguggGCGAGGagGCAugUGCCGCCCUGCu -3'
miRNA:   3'- -GCGG-------------CGCUCCgaCGU--GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 39803 0.75 0.153893
Target:  5'- cCGCCaagccccugguggGCGAGGagGCAugUGCCGCCCUGCu -3'
miRNA:   3'- -GCGG-------------CGCUCCgaCGU--GCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 64816 0.75 0.17392
Target:  5'- uGCCGCGAGGCUGaa-GUCGgCCaGCa -3'
miRNA:   3'- gCGGCGCUCCGACgugCGGCgGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 85033 0.74 0.181958
Target:  5'- uGCCGCGGGGCauucgGCaACGUCGCuacaaggCCUGCc -3'
miRNA:   3'- gCGGCGCUCCGa----CG-UGCGGCG-------GGACG- -5'
24593 5' -64.2 NC_005264.1 + 142684 0.74 0.18239
Target:  5'- uGCCGCGAucuugggcgccGGCgGCGCGCCaCgCCUGCc -3'
miRNA:   3'- gCGGCGCU-----------CCGaCGUGCGGcG-GGACG- -5'
24593 5' -64.2 NC_005264.1 + 154029 0.74 0.184127
Target:  5'- uGCCGCGAgcGGCgcucgaagaggagcGCugGCCGUCCUGg -3'
miRNA:   3'- gCGGCGCU--CCGa-------------CGugCGGCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 35002 0.74 0.184127
Target:  5'- uGCCGCGAgcGGCgcucgaagaggagcGCugGCCGUCCUGg -3'
miRNA:   3'- gCGGCGCU--CCGa-------------CGugCGGCGGGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.