miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24593 5' -64.2 NC_005264.1 + 94560 0.74 0.18676
Target:  5'- uGCCGCuggggacgcaaaGAGGCggcagcaGCAgGCCGCCCgcgGCg -3'
miRNA:   3'- gCGGCG------------CUCCGa------CGUgCGGCGGGa--CG- -5'
24593 5' -64.2 NC_005264.1 + 35636 0.74 0.191222
Target:  5'- cCGCUGCGAGG--GCACGuuGUaCCUGCg -3'
miRNA:   3'- -GCGGCGCUCCgaCGUGCggCG-GGACG- -5'
24593 5' -64.2 NC_005264.1 + 126333 0.73 0.207098
Target:  5'- cCGCCucguCGAGGCcGCgcgcuucgcacgaaaACGCCGCCUUGCc -3'
miRNA:   3'- -GCGGc---GCUCCGaCG---------------UGCGGCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 157142 0.73 0.214957
Target:  5'- cCGCCGCcAGGCguUGCcCGCgCGCUCUGUa -3'
miRNA:   3'- -GCGGCGcUCCG--ACGuGCG-GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 142585 0.73 0.214957
Target:  5'- -uCCGCGAGGC--CGCGCCGCaaccCCUGCc -3'
miRNA:   3'- gcGGCGCUCCGacGUGCGGCG----GGACG- -5'
24593 5' -64.2 NC_005264.1 + 38115 0.73 0.214957
Target:  5'- cCGCCGCcAGGCguUGCcCGCgCGCUCUGUa -3'
miRNA:   3'- -GCGGCGcUCCG--ACGuGCG-GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 64152 0.73 0.225138
Target:  5'- gCGCCGCGAuccGGCcggugUGCaaGCGCCGCCa-GCa -3'
miRNA:   3'- -GCGGCGCU---CCG-----ACG--UGCGGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 69598 0.73 0.225138
Target:  5'- gCGCCGaCGAGG----GCGCCGCCCgGCg -3'
miRNA:   3'- -GCGGC-GCUCCgacgUGCGGCGGGaCG- -5'
24593 5' -64.2 NC_005264.1 + 95654 0.73 0.225138
Target:  5'- gCGCCGCGucauAGcGCUGCAgGCCGCCa--- -3'
miRNA:   3'- -GCGGCGC----UC-CGACGUgCGGCGGgacg -5'
24593 5' -64.2 NC_005264.1 + 78023 0.73 0.235186
Target:  5'- uGaCgGCGAGGCUucgcuccGUGCGCCauGCCCUGCc -3'
miRNA:   3'- gC-GgCGCUCCGA-------CGUGCGG--CGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 96640 0.72 0.258151
Target:  5'- gGCCGCgGAGGC-GCAcCGcCCGCCgaUGCg -3'
miRNA:   3'- gCGGCG-CUCCGaCGU-GC-GGCGGg-ACG- -5'
24593 5' -64.2 NC_005264.1 + 129560 0.72 0.2694
Target:  5'- uCGCCGCGuGGUcgugGCACcgaucuuGCgCGCUCUGCa -3'
miRNA:   3'- -GCGGCGCuCCGa---CGUG-------CG-GCGGGACG- -5'
24593 5' -64.2 NC_005264.1 + 102874 0.72 0.2694
Target:  5'- cCGCCGCGuGGCUgagcgGCGCGgacaccaugauaaCCGCCgaGCu -3'
miRNA:   3'- -GCGGCGCuCCGA-----CGUGC-------------GGCGGgaCG- -5'
24593 5' -64.2 NC_005264.1 + 61846 0.72 0.270003
Target:  5'- gCGCCGCGuacGGGUUGUuggcgaaaaACGCCGCaCCaGCc -3'
miRNA:   3'- -GCGGCGC---UCCGACG---------UGCGGCG-GGaCG- -5'
24593 5' -64.2 NC_005264.1 + 3760 0.71 0.274254
Target:  5'- uGCCGcCGGGGCgcUGCGggcccuuggucgacCGCCGCCgauCUGCg -3'
miRNA:   3'- gCGGC-GCUCCG--ACGU--------------GCGGCGG---GACG- -5'
24593 5' -64.2 NC_005264.1 + 122786 0.71 0.274254
Target:  5'- uGCCGcCGGGGCgcUGCGggcccuuggucgacCGCCGCCgauCUGCg -3'
miRNA:   3'- gCGGC-GCUCCG--ACGU--------------GCGGCGG---GACG- -5'
24593 5' -64.2 NC_005264.1 + 101558 0.71 0.276092
Target:  5'- gGCCGUGAuGaCUGCAUGCaCGUCCUuGCa -3'
miRNA:   3'- gCGGCGCUcC-GACGUGCG-GCGGGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 112269 0.71 0.276092
Target:  5'- gCGCCGCGuGcGCUucccGCACGCgCGCgCCUaGCu -3'
miRNA:   3'- -GCGGCGCuC-CGA----CGUGCG-GCG-GGA-CG- -5'
24593 5' -64.2 NC_005264.1 + 52205 0.71 0.28229
Target:  5'- gGCCGUGGGGCgcggugGCGCGagcugguaCGCCUUGa -3'
miRNA:   3'- gCGGCGCUCCGa-----CGUGCg-------GCGGGACg -5'
24593 5' -64.2 NC_005264.1 + 117416 0.71 0.287962
Target:  5'- aCGCUauCGGGGCUGUcgcggcgcgcaggGCGCCGCCCUcCa -3'
miRNA:   3'- -GCGGc-GCUCCGACG-------------UGCGGCGGGAcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.